Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1404 ATGTCGCAGCAAAGGCAGAATAAGATGATGAGTCCCAACGATGTCAGACAAGTTGGTGACACGACCTATACCAAGATCTTCGTTGGAGGATTGGCATGGGAAACTAAAAGAGACGCTCTCAGACGCTATTTTGAGCAGTTTGGGCAGATCTTAGAGGCTGTCGTTATCACTGACAGGAACACTGGAAGATCAAAAGGCTACGGCTTTGTGACCTTCAGGTACCCAGACTCAGCAATAAGAGCTTGTCAGAATCCCTTTCCTTTAATTGATGGAAGGAGAGCTAATTGTAATCTTGCAGCTTTTGGTGAACAGAAATTCAATCCATCTACCCCAGTTGCAGCAAGTGAGAAATTCAGCAGTAATTCATGGACTATGGTACCGATCCCATTTCAAGGCACCTCTGCATATTATAATCAGCACATACCCCATTACGCTTATCCTTATCCACCCTATAGGTATCCTGGTTATCCTCCCCCACAAGAAATCTATGCAATGAACTACTATAATGTTTATGGCGGGCAGCAGCTTCCATTTCGTTCGCCTCCAACATTATGCCAACCCTTCTATGGCGTTAGACATTCTACACCTCCAGCATATGTGAGAAAGACACAATACTCTGATATTTCACCGCAGCAATTGTACACAGTTGTTGGCATACCAGAGCCTATTTCAGTGTCTCCTTCAATATCCAGCACTGGATTAGTCACAGGAACAGTAGTTGCAGCAGGAAAGACAGGATCCTCCCCTGAACAGAAATCTTCAGCTTAG 768 0.444 MSQQRQNKMMSPNDVRQVGDTTYTKIFVGGLAWETKRDALRRYFEQFGQILEAVVITDRNTGRSKGYGFVTFRYPDSAIRACQNPFPLIDGRRANCNLAAFGEQKFNPSTPVAASEKFSSNSWTMVPIPFQGTSAYYNQHIPHYAYPYPPYRYPGYPPPQEIYAMNYYNVYGGQQLPFRSPPTLCQPFYGVRHSTPPAYVRKTQYSDISPQQLYTVVGIPEPISVSPSISSTGLVTGTVVAAGKTGSSPEQKSSA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1404 255 SMART rrm1_1 25 97 IPR000504 GO:0003723
Glsi10g1404 255 PANTHER BOULE-RELATED 11 221 - -
Glsi10g1404 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Glsi10g1404 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Glsi10g1404 255 SUPERFAMILY RNA-binding domain, RBD 9 99 IPR035979 GO:0003676
Glsi10g1404 255 Gene3D - 1 109 IPR012677 -
Glsi10g1404 255 CDD RRM_RBM24_RBM38_like 24 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1404 Glsi-ChrGlsi10 9483179 9484735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1404 20 158 C2H2 Transcription Factor Family AT2G19380 30.818 1.69e-15 73.9