Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1385 ATGATGGGAAGTGACGAGTATATTCAAGCATCAGAAGAAAAAATCTTTGAAAGCTTCACCTGCTCAGAGACACCTCAAAATCCAAAGAAGAAAAATAACAAGGTAGAGAACAAGAGGAGGTTTAGTGATGAGCAAATTAGATCACTAGAGTGCATATTTGAGTCTGAGTCGAAGCTGGAGCCAAGGAAGAAGATGCAGCTAGCAAGGGATATTGGGCTGCAACCTCGCCAAGTTGCCATATGGTTCCAGAACAAAAGAGCCAGATGGAAATCTAAAAGGATAGAGCAAGATTACAGGAAGCTGAGAGATGAGTATGACAGTTTAGCATCAAGGTTTGAGTCCCTAAAGAAAGAGAAGGAGTCATTGCAATTTGAGTTGCAGAAGCTTAATGGTTTACTGGAGACATCTCATGATGGCAAGGAAAATAGCAGACACTATGCTGGCTTATGCAGTGGACACGGCAATTGGAGGACTGAAGCAAAGCCAAGGTTCTCAAATGATGATCAAAATGAACTTAGCAAAAAGACTGGGTATTCTGAGGACATAGGATACCAACTTCTGAAAATGGATGAGCATGAAGAAGTTCCATTGGGATCGCTTGAAAAATGGTACAGTGGGGATCCAAGTGCTCTCTTAGATCAACCTTGCACTAGTTCACATTCACAATGGTTAGATTTCTGGAGTTGA 687 0.4163 MMGSDEYIQASEEKIFESFTCSETPQNPKKKNNKVENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDIGLQPRQVAIWFQNKRARWKSKRIEQDYRKLRDEYDSLASRFESLKKEKESLQFELQKLNGLLETSHDGKENSRHYAGLCSGHGNWRTEAKPRFSNDDQNELSKKTGYSEDIGYQLLKMDEHEEVPLGSLEKWYSGDPSALLDQPCTSSHSQWLDFWS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1385 228 MobiDBLite consensus disorder prediction 19 39 - -
Glsi10g1385 228 Pfam Homeodomain 38 90 IPR001356 GO:0003677
Glsi10g1385 228 Gene3D - 36 97 - -
Glsi10g1385 228 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Glsi10g1385 228 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 27 165 IPR045224 GO:0003700
Glsi10g1385 228 SUPERFAMILY Homeodomain-like 21 92 IPR009057 -
Glsi10g1385 228 CDD homeodomain 39 93 IPR001356 GO:0003677
Glsi10g1385 228 SMART HOX_1 35 96 IPR001356 GO:0003677
Glsi10g1385 228 Coils Coil 84 132 - -
Glsi10g1385 228 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Glsi10g1385 228 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Glsi10g1385 228 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Glsi10g1385 228 FunFam Homeobox-leucine zipper protein ATHB-7 16 92 - -
Glsi10g1385 228 Pfam Homeobox associated leucine zipper 92 133 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1385 Glsi-ChrGlsi10 9379677 9380443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1385 29 228 Homeobox Transcription Factor Family AT2G46680 40.637 2.83e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi10g1385 Homeodomain 1.7e-16 CL0123