Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1383 ATGATTAAAAAACCGTCTCGAACTCGCCTGGCAGAGACCCTATCAGCGAGAGGGCAGGGGACAGAAAGAAATCCCGCGAAAATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACCATAACCCTTGAGGTTGAGTCCAGCGATACTATTGATAATGTGAAGGCTAAGATTCAGGACAAAGAAGGAATTCCGCCTGATCAGCAGAGATTGATCTTTGCTGGGAAGCAGCTGGAGGATGGCCGTACCCTCGCCGATTACAACATTCAGAAAGAGTCAACATTGCATCTTGTTTTGAGGCTTCGAGGTGGCATTATTGAGCCATCTCTGATGGCATTGGCCAGGAAGTATAACCAGGACAAGATGATCTGCCGCAAGTGTTATGCACGTTTACACCCCCGCGCTGTCAACTGCAGGAAAAAGAAGTGTGGGCACAGCAACCAGCTGAGGCCAAAGAAGAAGATCAAGTAA 468 0.485 MIKKPSRTRLAETLSARGQGTERNPAKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1383 155 SUPERFAMILY Ubiquitin-like 24 103 IPR029071 -
Glsi10g1383 155 PRINTS Ubiquitin signature 80 101 IPR019956 -
Glsi10g1383 155 PRINTS Ubiquitin signature 59 79 IPR019956 -
Glsi10g1383 155 PRINTS Ubiquitin signature 38 58 IPR019956 -
Glsi10g1383 155 Gene3D - 107 155 IPR038587 -
Glsi10g1383 155 CDD Ubl_ubiquitin 28 103 - -
Glsi10g1383 155 FunFam Ubiquitin-60S ribosomal L40 fusion 28 105 - -
Glsi10g1383 155 SUPERFAMILY Zn-binding ribosomal proteins 103 154 IPR011332 GO:0006412
Glsi10g1383 155 ProSitePatterns Ubiquitin domain signature. 54 79 IPR019954 -
Glsi10g1383 155 PANTHER UBIQUITIN 28 114 - -
Glsi10g1383 155 Gene3D - 23 106 - -
Glsi10g1383 155 ProSiteProfiles Ubiquitin domain profile. 28 103 IPR000626 GO:0005515
Glsi10g1383 155 FunFam ubiquitin-60S ribosomal protein L40 106 155 - -
Glsi10g1383 155 Pfam Ribosomal L40e family 105 154 IPR001975 GO:0003735|GO:0005840|GO:0006412
Glsi10g1383 155 SMART Ribosomal_L40e_3 104 155 IPR001975 GO:0003735|GO:0005840|GO:0006412
Glsi10g1383 155 SMART ubq_7 28 99 IPR000626 GO:0005515
Glsi10g1383 155 Pfam Ubiquitin family 30 101 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1383 Glsi-ChrGlsi10 9371685 9374743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1383 28 155 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 1.03e-92 263