Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1368 ATGAAGTCAACTCTAACTGGTAAGTACTTAATTAGCTTTCTTTACGGGAAGAAGGCTTCCATTATCTGCTCAGCACTTCTGAAGAAGAAAGGCTCAGAAGTCGATTCTGCAGAAATAGACAAAGGTGGTATTGATTCTGTTCGTCTTTATCTGTTGAAAGAATCATATCGGAGTTTAAGCCTCCATCGGTATATTCCTCAAACTAGTATATCTATAGTTATTTCAATGGATGCTCTTTTTCCCTTCGACCCTCTAATGTTACAGCATGGCAATAGCTTAGTGCATCGGTATTCACAAAACTGCATGCGCCTGCTACAAGAGGAAATGGGTCACTGTCTAAACATTGTTAAGAACAATGAAGCAGAAAGATCAGCTGACGGGACTACTGAACAGGATGGGACTGGGCCTGGTGGAAAGGTTTGGGCATCAACAATAAGTCACAGCCCGCCATTAGAGAATGACGTGGCAAAATCTGGTACCTTGTCGCATCGTTTTGGACTACCGGATCGTGGGGCAGCAGTGTCCGAGGATTGCCGGGAAATTTTTTCTGCTCGTTTTCCTGAAAATTTAATCAGAAGTGAAACAGTGTTTCACACGAATGTCAGCCAACCCCCGTACGGCCGTTTGTTCCCATTGTGCAGTGTATTTCTCAGCAACCAGCCTGAGATAACTGTGCTTTTGATTAATGAGATGGCGAAGGAGTTGATTGTTCATGCCTCGCTCATTCCAGCATCTGAGTTACTTTTTCTTACTGTCCTTGGTATATTTGATATTACCAAAGCAGCCAATGAGGTCCAAATTCAGAAGGATAATTTCAGAAAATTCTCTACTTACCTGGAGAAAATCTCATTTATATTAAAAGAATTAACGAAGGAAGAGATACACTATGGAGAGAACTTGAAAAACGCCCTGGATGTCCTCAACCAAGAAGTTAAAGCTGCTAAGCAGCTGGTTTGTGAGTGCAACAGTAAAAGTAAGATTTATCTTTTGATTAATTGCAGAAAGATTGTTAAGAACTTGGAGTGTTGCACAAAAAATATTAGTCGAGCAGTAAGCCTCATCCCTCTAGCCTCTTCGGATATTTCATCTGGTCTAAATAAACAGGTAAGTGAACTATGCCAGAACATGTTGGATGCTGAGTATCAAGAATCTGCAGCAGATGAGGAAACTCTAGAAAAAATTGAGTCAGCAATACTAGAGAGAAATGCTGATCGGTCTTGTGCAAATAAGTTGCTAGCTTGTATTGTAGATGCCATTGGGATCTCCAATGAGCATGCTGCTCTGAAGAGAGAATTTAACGAGATGAAAAGTGAAATGGAAAATGCTAAGTCAAGAAAAGATATAGCAGAAGCTCTGCATATGGAGCAGATAATTGGACTGCTTGAAAAGGCTGATTCTATTACTTCAGCCCAAGAGAAAGAGAACAAGTATTTTGAAAAGCGAGATTCTCTAGGAAGACAGCTGTTGGAGCCTCTGCAGTCATTTTACTGCCCAATCTCACTTGATGTTATGGAAGACCCTGTGGAGACTTCCTCTGGCAAAACATTTGAGAGAAGTGCAATAGAGAAGTGGCTTGCTGAAGGGAATAATAACTGCCCCTTGACCATGTTGCCTCTGGATACTGCAATTTTAAGGCCCAATAAGACTCTTCGACAGTCAATTCAAGAATGGAAAGACAGGAACATCATTATTACCATTTCTACTCTTAAATCCAAACTCCAAACAAATGAAGAAGAAGAAGTTCTTGAGTCCTTAGAAAAATTGCAGGACCTCTGCATGGAAAGACAGATGCACCGAGAATGGGTAAAAATGGAGAATTACATTGCAGTTCTTATTGGACTCCTTGGGGCTAAAAATCGTGAAATAAGGAAGCGTGTTCTGTTCATCCTGTCTTTGCTTGCCAAGGATAATGAAGAGAACAAGGAAGATGTTGCTAAAGTTGATAATGCACTTGAATCAATTGTTCACTCACTTGCACGTCAAATTGGGGAAAGCAAGTTAGCTGTGGAGTTGCTGTTAGAATTATCTAGAAGTAATATGGTGCGGCATCTCATAGGTAACGTTCAAGGAAGCATACTCCTCCTGGTGACAATGTTAAACAGCGATGACAATGAAGCAGCCCAATATGCACATGAACTGCTGGAGAACCTCTCTGTCCTTTATCTGAATGTTATAGAAATGGCAAGGGCAAATTATCTCAAGCCTTTACTGCGGGACCTTTCTTCAGGATCAGAAAATGTGAAGATAATCATGACTAAAACTTTATCAGAAATTGCATTGACTGACCAGAATAAATTATCATTAGTCAAAGATGGGGCGCTGCAGCCGCTTCTTCAGTTGCTCTCAAATATTGACATAGAAATCAAGAAAGTGGCTGTCAAAGCTCTGCTACAGCTCTCAAGCTTGCCGGAGAATGGCCTACAGATGATTAGGGAGGGTGTTGCTCAACCCCTCTTTGAACTGCTATATCGTCATAGTTTACAGTCAACAGCTCTGCGTGAACTGGCAGCTGCAACAATAATGCATCTTGCCATCTCAACCACTCACCAACAAGCTGCTGAAGAAAAGGTTTCGTTGTTAGAGTCTGAGGAAGACATATTTAAATTCTTCTCTCTCATTTCCTTGACGGGACCTGACATACAAAGCAAGATTCTAAAAACTTTCCACGCATTGTGCCAATCTCCCTCTGGTTTCACCATCAGAGAAAGACTGAGACAGCTCTCAGCTGTTCAAGTATTGGTTCACTTGTTAGAGCTTAATAACCAAACAGTGCGAGCAAATGCCATGAGGCTGTTATATTACTTGACAGAAGACGGTGACTACAGCAACTTTTCATCACATGTAACTGAAAGATGTATTAAGGTCTTGCTTATCATCATCGAGACTACTGATGATGCAGAAGAGATGGTTGCTGCTATGGGTATCATCTCTAGACTTCCACAGGAGCCACATGTGACCCAGTGGCTTTTAGATTCTGGGGTAGTTAAGATTATTTTGGCTTGTCTTACTGATCGACATAGACATGCCTCACACAAACGGCAGGTCTTAGAGAACTCTGTCCTAGCTCTTTGCTGTTTTACTGTCTCAACAAATATGGAGTGGCAGAAGTCAGTAGCTCAAGAAGGCATCATCCCGGTCCTGGTACAATTGCTGGTTTCTGGAACACCTTTTGTAAAAAAAAATGCAGCCATTTCAATCAAGCAGTTTTCAGAAAGTTCATACCGCTTGAGCAAGCCAATAAAGAAGCCAGGTATATTTAAATTCTGCTTGGCAGCTCATGAAACTGGTTGCCCAGTTCACCTAGGCACCTGTTCTGTTGAGTCTTCATTCTGCATCTTAGAGGCTAATGCTTTGGAGCCCCTTGTGAGGATGCTAGCAGAGCAAGATATTGGAACATGTGAAGCTTCTTTAGATACACTGTTGACATTGCTTCTCGGTGAAACACCACAGAATGGAAGTAAGGTACTTGCAGATGCAAATGCTATTACTCCGATGATAAAATTATTGAGTCTTCAGGATGCCAGGTTGCAGGAAAAAACTCTAATAGCTTTAGAGCAAATCTTTCAACTTGATGAAATAAAAAATCGGTATAAATCTTTGGCCACAATGGCCTTGGTTGACATAACGCAGAGGAGAGAGAGCCGTTTGAGAAGTCTTGCTGCCAAAGTCCTTGCTCAATTGGGTGTACTTGATAAACAGTCTTCATATTTTTAA 3714 0.413 MKSTLTGKYLISFLYGKKASIICSALLKKKGSEVDSAEIDKGGIDSVRLYLLKESYRSLSLHRYIPQTSISIVISMDALFPFDPLMLQHGNSLVHRYSQNCMRLLQEEMGHCLNIVKNNEAERSADGTTEQDGTGPGGKVWASTISHSPPLENDVAKSGTLSHRFGLPDRGAAVSEDCREIFSARFPENLIRSETVFHTNVSQPPYGRLFPLCSVFLSNQPEITVLLINEMAKELIVHASLIPASELLFLTVLGIFDITKAANEVQIQKDNFRKFSTYLEKISFILKELTKEEIHYGENLKNALDVLNQEVKAAKQLVCECNSKSKIYLLINCRKIVKNLECCTKNISRAVSLIPLASSDISSGLNKQVSELCQNMLDAEYQESAADEETLEKIESAILERNADRSCANKLLACIVDAIGISNEHAALKREFNEMKSEMENAKSRKDIAEALHMEQIIGLLEKADSITSAQEKENKYFEKRDSLGRQLLEPLQSFYCPISLDVMEDPVETSSGKTFERSAIEKWLAEGNNNCPLTMLPLDTAILRPNKTLRQSIQEWKDRNIIITISTLKSKLQTNEEEEVLESLEKLQDLCMERQMHREWVKMENYIAVLIGLLGAKNREIRKRVLFILSLLAKDNEENKEDVAKVDNALESIVHSLARQIGESKLAVELLLELSRSNMVRHLIGNVQGSILLLVTMLNSDDNEAAQYAHELLENLSVLYLNVIEMARANYLKPLLRDLSSGSENVKIIMTKTLSEIALTDQNKLSLVKDGALQPLLQLLSNIDIEIKKVAVKALLQLSSLPENGLQMIREGVAQPLFELLYRHSLQSTALRELAAATIMHLAISTTHQQAAEEKVSLLESEEDIFKFFSLISLTGPDIQSKILKTFHALCQSPSGFTIRERLRQLSAVQVLVHLLELNNQTVRANAMRLLYYLTEDGDYSNFSSHVTERCIKVLLIIIETTDDAEEMVAAMGIISRLPQEPHVTQWLLDSGVVKIILACLTDRHRHASHKRQVLENSVLALCCFTVSTNMEWQKSVAQEGIIPVLVQLLVSGTPFVKKNAAISIKQFSESSYRLSKPIKKPGIFKFCLAAHETGCPVHLGTCSVESSFCILEANALEPLVRMLAEQDIGTCEASLDTLLTLLLGETPQNGSKVLADANAITPMIKLLSLQDARLQEKTLIALEQIFQLDEIKNRYKSLATMALVDITQRRESRLRSLAAKVLAQLGVLDKQSSYF 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1368 1237 Gene3D - 251 358 IPR036537 GO:0007166
Glsi10g1368 1237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 563 IPR013083 -
Glsi10g1368 1237 Pfam MCAfunc domain 258 399 IPR045766 -
Glsi10g1368 1237 Gene3D - 564 663 IPR011989 -
Glsi10g1368 1237 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 246 1237 - -
Glsi10g1368 1237 SMART arm_5 678 719 IPR000225 GO:0005515
Glsi10g1368 1237 SMART arm_5 802 845 IPR000225 GO:0005515
Glsi10g1368 1237 SMART arm_5 595 635 IPR000225 GO:0005515
Glsi10g1368 1237 SMART arm_5 896 937 IPR000225 GO:0005515
Glsi10g1368 1237 SMART arm_5 1148 1189 IPR000225 GO:0005515
Glsi10g1368 1237 SMART arm_5 720 760 IPR000225 GO:0005515
Glsi10g1368 1237 SMART arm_5 1105 1145 IPR000225 GO:0005515
Glsi10g1368 1237 SMART arm_5 761 801 IPR000225 GO:0005515
Glsi10g1368 1237 SMART arm_5 1031 1071 IPR000225 GO:0005515
Glsi10g1368 1237 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 772 814 IPR000225 GO:0005515
Glsi10g1368 1237 Coils Coil 425 452 - -
Glsi10g1368 1237 SUPERFAMILY ARM repeat 733 1092 IPR016024 -
Glsi10g1368 1237 SUPERFAMILY ARM repeat 565 718 IPR016024 -
Glsi10g1368 1237 Gene3D - 1099 1227 IPR011989 -
Glsi10g1368 1237 SMART Ubox_2 494 557 IPR003613 GO:0004842|GO:0016567
Glsi10g1368 1237 Pfam Armadillo/beta-catenin-like repeat 762 800 IPR000225 GO:0005515
Glsi10g1368 1237 SUPERFAMILY RING/U-box 480 561 - -
Glsi10g1368 1237 Coils Coil 297 317 - -
Glsi10g1368 1237 SUPERFAMILY ARM repeat 1012 1228 IPR016024 -
Glsi10g1368 1237 ProSiteProfiles U-box domain profile. 490 564 IPR003613 GO:0004842|GO:0016567
Glsi10g1368 1237 Pfam U-box domain 495 560 IPR003613 GO:0004842|GO:0016567
Glsi10g1368 1237 CDD RING-Ubox_PUB 495 544 IPR045210 -
Glsi10g1368 1237 Gene3D - 664 1095 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1368 Glsi-ChrGlsi10 9274640 9284897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1368 493 1237 U-box Gene Family AT1G76390 28.643 1.65e-58 215