Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1339 ATGGGGAAGAAAGGTGGTGGCTGGTTCTCATCGGTGAAGAAAGTTTTCAAATCATCTTCTAAGGAGAGGAAGGTGATCGATTCCCCTGAAAATGCAGAGAAATGGCAGCATGAAGCGCCAGAGGTGGTGTGTTTTGAGCATTTTCCTGCAGAGAGTTCTCCTGATGATGTCACCAACGAGGAGAGTACCACATCGACGCCTGTGACTGAAGATAGAAATCACGCCATTGCCGTAGCAGCGGCAACTGCTGCGGCTGCTGAAGCCGCGGTTGCAGCTGCTCAAGCAGCAGCGAGAGTCGTTCAATTGGCAGGTTATGGACGCCAGTACTCCAAGGAAGAAATAGCAGCAACACTCATTCAATCATACTACAGAGGCTACTTAGCTCGACGTGCACTGCGTGCTTTAAAGGGATTAGTGAGACTGCAAGCACTTGTGAGAGGTCATAATGTGCGTAAGCAAGCTCAAGTGACAATGCGTTGTATGCAAGCGTTGGTCAGAGTACAGGCAAGAGTAAGATCTCACAGACTCCAATTGACCCATGAGAAGCTTCAGAAGAGAGTGGAGGAGCACGCGCAAAGAGAATTTGAGGAACAAGATTCAAAGCCCATGAGCCCCATGCAAAAGCTATACGACGATGGTTGGGACAATAGGCATCAAAACAGCCAGAAAATTAAGGAAAATGACCTGATAAAACATGATGCTGTGATGAAGAGGGAGAGAGTTCTTGCTTACGCTTTCAACTATCAGCAACAGCAGAAGCAGTTTCAGCATGCAGCCTCGAGTGGTGATAAAACTGGAACTTGTGCCAATGAGCATGAAAAGGCCCAGTGGGGTTGGAACTGGTTGGAGCGTTGGATGTCTTCTCAACCCCACCAAGTTAGGCATTTGGGGCCGCGTGACGTCTCTCGCATGACTCTTGCTACTGCAACCACAACCCCTACTACAACAGATGACATGTCTGAGAAGACGGTGGAAATGGACATCGTTGCACCTGCAAGCTCAAGCAACGTCAACATGGGCCAAATGAAGCAAGGCTACTCTGCTTCAAGCCCAATTTCTAATACGCAAGACCAGCGACAACCCAATGCAAATATACCTAGCTATATGGCCCCAACCCAGTCTGCAAAGGCCAAGTTGCGGAGTCAAGGCCTAGTCAAGCCACGTGATTCATCTGAGCCACAGTGGAATTCATCAACGAGGAAGAGCTCTGTTATTGGGTCAGGCTGTGACTTCTCTGGCTCAGGTGGAGGAATGGCAAATTACCAGTTTCCTAAGAGCCCAAGCCCAAACATTAATGGGATCCGGCTAGAGTCTAGACGAATGTCAGTTGAAAGCCCAGATTATGTTGGCGCCGAAGATTGGGCCCTGCCTCCTGGAGCCCATGGTTTACATTAA 1395 0.4903 MGKKGGGWFSSVKKVFKSSSKERKVIDSPENAEKWQHEAPEVVCFEHFPAESSPDDVTNEESTTSTPVTEDRNHAIAVAAATAAAAEAAVAAAQAAARVVQLAGYGRQYSKEEIAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQVTMRCMQALVRVQARVRSHRLQLTHEKLQKRVEEHAQREFEEQDSKPMSPMQKLYDDGWDNRHQNSQKIKENDLIKHDAVMKRERVLAYAFNYQQQQKQFQHAASSGDKTGTCANEHEKAQWGWNWLERWMSSQPHQVRHLGPRDVSRMTLATATTTPTTTDDMSEKTVEMDIVAPASSSNVNMGQMKQGYSASSPISNTQDQRQPNANIPSYMAPTQSAKAKLRSQGLVKPRDSSEPQWNSSTRKSSVIGSGCDFSGSGGGMANYQFPKSPSPNINGIRLESRRMSVESPDYVGAEDWALPPGAHGLH 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1339 464 ProSiteProfiles IQ motif profile. 136 163 IPR000048 GO:0005515
Glsi10g1339 464 SMART iq_5 134 155 IPR000048 GO:0005515
Glsi10g1339 464 SMART iq_5 111 133 IPR000048 GO:0005515
Glsi10g1339 464 MobiDBLite consensus disorder prediction 50 71 - -
Glsi10g1339 464 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Glsi10g1339 464 PANTHER IQ-DOMAIN 5-RELATED 1 402 - -
Glsi10g1339 464 MobiDBLite consensus disorder prediction 336 379 - -
Glsi10g1339 464 MobiDBLite consensus disorder prediction 336 411 - -
Glsi10g1339 464 Pfam IQ calmodulin-binding motif 115 133 IPR000048 GO:0005515
Glsi10g1339 464 Pfam IQ calmodulin-binding motif 139 154 IPR000048 GO:0005515
Glsi10g1339 464 MobiDBLite consensus disorder prediction 55 71 - -
Glsi10g1339 464 MobiDBLite consensus disorder prediction 387 409 - -
Glsi10g1339 464 Gene3D - 112 154 - -
Glsi10g1339 464 Pfam Protein of unknown function (DUF4005) 353 416 IPR025064 -
Glsi10g1339 464 Coils Coil 173 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1339 Glsi-ChrGlsi10 9109412 9112526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1339 1 454 IQD Protein Family AT3G49260 51.037 6.46e-108 326