Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1334 ATGGTCGAATCCAATGAACGGTTCAGGACTTGCAGCAGAAGCGGGAGTTCCGGCTGGAAGTGCAGGGAAATGGCAATGAGTGGAAGAGCGATGTGTGAGAAACACTACCTCTATAACCTACAGCGTAGTAGCAAGAACAGGATGGAAAATGCTTCTGGGGGTACTACATTGAAGCAGAACAAAAGCAAACGGAAACGACCCAAAATTGAAGAAAATTCATTAAGTGGGCATGCGGGTCCTGTTAGGAATGGAAACCACAACGGTGGTTCGAATGTTGTTGAGGAAATTGTACGCCTTTTTGGTGAAGTACAAGGAAATGGAGTAAATCTTCCCCGTAAAAGTATGGACATTGGGTATCCTGGAGAGGGGCAACAAGTTCAGGTGGGCGGATTTGTGGAAGAATGTGAAAATATGAGTCAAATTCCTGGCGATAGAGTAGAATTTCAAGTTGGGCATTCTGAGGGTGGGAATCAACATGCTGGTCCGGGTCGTCATGATGATCCTGATCAGCGATGGTGCAGTGAACATGCTTGTGGAAATAGCGGCGGTGTTGCTGATGCTGGCCAAGAAGAGCACATAAGTGGGAGTGGCGCGGATGTTTGTGAAAATGACGCTATGGGCATTCCTGCTGCGGTAATTGAAGGCCTAATTTGTGAAGTTAGTTCTGGCAGTCTACGTGATCAGGGTTTCCAAGCTCTTCTCTGTCAAGACAGGGATTGTGAGGACAATCTAACTTCTATTGGTGAAAATGCATATGACTTTAAACGAGAAGTTGTTAGGTGTGTGGGAATCCCAGATGTGTATGGTAAATGTGAAGATGAAAAAGTTGGTAACTTAAAGGTGCCTGGGTCAAAAGGCAAGCGTGGCCGGCCCAAAGGATCAAAGAACAAGAAGAGAATTGTGGTTGTTAAAGAGAGAAGAGAACTGTTAAGTGCTGCTAATAATGAGGAGGGAGGTGAAGCCTTGAGGCCACATGTTAAGAGAGGCCGGCCAAAGAGTTCAAAGAATGAGAATAAACAGCTTATAAGAGAAAAAAGCACTACTATGAATGGACAAACTGTTAATAGAAATGAAAGTGCGGACACAAATGCTATAAATTGTCTCGAAGTTGTAGAGTGTGAAAGACCAATAATCATTGATGAGATATATAAGGTGCTGCCTGTTGAGGAAGATGCTAGTAATGAAGATGGTGGCAAAGTTGCAAGACTAAAGAAGCACGATCAATCAAAAGGTCTGAAAAATAAAGAGAAGAATAGTGTGTGTGCTAGTAATGAAGGTGTTTGTGAGATTGCAAGACCAAAGAAGCGTGGAAGACCAAAGGGTTCAAAAAACAAAAAAGAGAGTACTGAGTGTGCTAGTGATGTAGATGCAGGTGACATTGAATTGCCAAAGAAGCCTGGTAGACCAAAGGGTTCGAAAAATAAAATGAAGAGTATTATGTGTGCTAGTAATGCAGGTGCAGCTGACATTGAATTACCAAAGAAGCCTGGTAGACCAAAGGGTTCGAAAAATAAAAAGAAGAGTATTGTTTGTGCTAGTAATGCAGGTGCAGGTGACATTGAGACACCAAAGAAGCGTGGTAGACCAAAAGGTTCAAAAAATAAAAAGGAGAGTATTGTGTGTGTTAGCAATGTGGGTGCAGGTGACATTGAGACACCAAAGAAGCGTGGTAGACCAAAGGGTTCAAAAAATAAGGAGAGTATTGTGTGTCAAAAATATCTGGGGAGATCTAGTGATATTCAGTTTGAAGATGGTGGTGGAGTTGGAACCGTTTGGACAACTGGTTTAGAGAATGCTAAGTTGGCTCTTCTATGTGAGGAAGAGAAAGGGGTGCCTGCTGTACCCACCTATCATAATCAAGACAGAAATGAGATTGCGCAGCCAACAGTTAAGCGTGGTCGACCAAGGGGTTCAAGAAACAAGAAGAAAAAATTAGCAGATCAGATAAATTTGGAAAGACCTGGTAAAGTTATGTTTGTGGATAAAGGTGAGCAAGATATAGGTTCACTTGCTGAAATTACTGGTAGTAAAAAATGCGGATATGTGGATCTACAGCAGAAAAAAAGTGAGGGAAGAAATTTTGTAGCTCTACAAAATGAGGGAATGCCTTGTGAACTGGTGTCTGTCAATGATGGAAGTAAAATAACTGTTAAGGCAGTTGGTTGGGAATATTGTAGGGCTACTCATGTGGGTGATGGAGATTGGGATATGCCTACTAAGGCCGCCGGTGATAATGAGGTTCTCAATAAGAACCATGTTAAAAGTAAGCATGGTCGACCAAAGGGTTCCAAAAGGAAGAAAAATATTGCTAGTGAAGGAAAAGAGCATTTGACTAGAAAAATTATTGGTGGATGTAATAAGGAGACTGAGTCCATTAGGTTGGCTGGACCAAAGATTGGGATCACTAATTCTCAAGTTGAGGTAGACAAGGAATTTCCTTGCAGTAGATCTTGTGAATTTGGATCTGGAAACAAGTTTAATAAGGGAAAAATCAAATGCGGCAGGACAAAGAGCTCTGGTAAAAAGGAAAAGGAGACTCTTTGCCCTTTGGATTCAGAGATTGAGAGGCATGGTAATGTGGCTGAGAAAGATGGAAGAACATCTGCTGAAGCTTCCTGTAGAAATGATATTGATCAACAAAAAGATAAGCATGGACAACCAAGGAGTTTAAGAAATAAGATACAGCCCCACCAATTAAGGAGTTCAAGAGGAAAGGCACCAACTGTTGCTGCTGTAGAAGATGAGAGTGAGCCAGTTGAAGTTATATACGAATTGAGGAGGAATGAGAGATCAAATAATAAGCAAAACCGACCTTTAAAAAATAAGAAGAGAATTTCTTTTGGCAGAGTGGTTGAAGACTCAAAAGTGCCTGGAAATAAAAAGATGAAAAATAAATGGTTAAAATATGGATCTGGCAACATTCAGAAGAGGTCTAGTGAAAGACTGAGAAAGATGTCAAACCTTGGATTGGAATCTTCAGGTTTGATGGATTTAACTTTGGAAGTTACATGCTTCTACATCCCTGATATGTGCAATATGAACTGGTACCCAGAGAAAACAAGAGAGGAGATAGAAAATGCTTGTCCCTTTTGTCTTGGTAATTGCAATTGCCGAATGTGCTTGAAGGAGGATGTATCTGTAGTGAATGGGAGTGTTGAATCAGATACAGAGATCAATTTGCAAAAGTTGCTTTACTTGCTTAAGAAAACTCTGCCTTTACTCCAGCATATCGGACAAGAGCAGAGATCAGAATTAAAAGTAGAAGCTAACATGCGCGGTTCGCAACTGATGGAAGAGGACATCATGCAGTCACAAATTGATGATGATGATCGAGTATATGAGAGTGACAACTGCAATACATCGATTGTCAATTTCCACAGAAGTTGTCCCAATCCTAATTGTAGTTATGATCTCTGTCTCACTTGTTGCATGGAAATAAGAAATGAACTTCAATTTGGAGATATTCCCACCAATGGAAACGAGGGAAAGGCTGGTATCTCATCTGGCTCTTCTTCCTGGAAAGCAGAGATAAATGGTCAGATTCCTTGCCCTCCAAAAGCAAATGGTGGTTGTGGTGCTGCAATGCTCTCACTGAGGCGCCTCTTTGAAGCTAATTGGGTTGACAAACTGATTAGAAATGCAGAGGAACTTACCATCAAATATCAACCCCCTAATTTTGATTTTACTAAAGGTTGTTTATTGTGCCATAATTTTGGGATAGATGGAGTACGGGATTCTGTAAAGCGGGCAGCTTCCCGAGAAAAGAGTCATGATAATTTTTTGTACTGCCCAAATGCTATTCCCATGGGAGACACAGAATTTGAGCATTTCCAGTTGCATTGGATAAGAGGCGAACCTGTTATAGTTAGGAATGCGTTTGAAAAAGCTTGTGGCCTTAGCTGGGATCCAATGGTCATGTGGAGGGCTTTTAGGGGGGCAAAGAGGATACTAAAAGAGGAGGCAGCTGTATTTAAAGCCATTGACTGCTTGGATTGGTGTGAGGTTGAAATTAATATCTTGCAGTTCTTCAAGGGCTACCTGGAAGGTCGTAGGTATAGAAATGGGTGGCCTGAAATGTTGAAACTAAAGGATTGGCCTCCATCAAATTTGTTCGAGGAGTGTTTGCCTAGGCATGGTGCTGAGTTTATAGCTATGCTTCCATTTAGTGACTATACCCATCCCAAATCTGGTATCCTAAATCTTGCTACAAAGCTCCCCGTTGTTTTGAAGCCAGATTTGGGCCCCAAAACATACATAGCTTATGGATCTTTGGAAGAGCTCGGTCGAGGTGATTCTGTGACAAAACTACATTGTGACATTTCAGATGCCGTCAATATTCTGACACACACAGCTGAAGTAAAGAGACCACCATGGCAAAGCAAAATCATAAACAAATTACGGAAAAAGTATGAAGCTGAAGATATGTGTGAGCTTAATGCCAGGAAGAATAAAGCACTGGGTGCATGTGGAAGAAAACCAAAAAGACGGCACCTAGATAAAAACACGAGTTATAAAAGCCCTGGAAAAGAAGATAATACTGTTGGAGACTCTGCCTTACTAAGAAGTCGAGGAAAAGAGGGAGAGAATATGAATGAACAGTGGAGTAGATCCATGGTTTTGGGACCCTCAAGATCATCTAGAGCAGCTAGTTCTCTAGGATGCTCAGCTTCTCCCAAAAGTAAAGTGAGTGTGAATGCTTGTGGGCAGTCAGTCCATGATTTAAATACAAGGGTTCAGCATTTTGATCGTAATAGTCAAGAAAATAATAGTAGGTTTTGCTTCATTGAAGATCAACCTGATACATATACCTTCTTCATTGATTTGAACTTGCCCACTCCACCAGTCTGGATAAATCAGGAAAATCTGACAAATCGTGCTGAACAACCTGAATTAAAAGACAGGTGCATACGTGCTGGGCAGTTACCCAATAGGATAATTCCCAACATTAAGCATAATCATGACAGTTCCTGTGCTGGTAAAAATGTTTCTGGATTCTTCTTCACTCAGGAGCCAAACTTAGGCATGCAGCATCCTTCTGTTTGTGGAAATGTTGGTGACGCTTATAGCTCTTTGAAAGAGGTGACTAATACAGGTTGTGACTCTTCTCTTCATGAGTCTTATTGTCACGGTCCTATAAGGGATATTGGAAAATATTTGAATAGTCGAAAACGTGATCGGCCTTCTACTAGAACAGAAGAAGCAAGATCATTCAACAGGTTAAATTCTTCAGGGACATGTTCAGAAATCAAGACTGACAAAATAGAGTCAATTAAAAATGATATGAGAACAACAAAAGATTTACTTAAAAATGATGATGGTTCAGAAACTCAATATGGGAGTGCTGTATGGGACATATTCCGTAGGCAGGATGTACCAAAGCTAATGGAGTACCTAAACAAACACCACAGAGAATTCCGCCACACAAATAATCTTCCAGTGAATTCAATAATTCATCCAATTCATGACCAGACGCTCTATCTGAACGACAGGCATAAAAAGCAGCTGAAGGAAGAGTTTGGTGTTGAACCATGGACATTTGAGCAACACCTTGGGGAGGCTGTTTTCATACCAGCAGGGTGCCCACATCAAGTGAGGAATAGACAGTCTTGCATAAAAGTGGCTCTTGACTTTGTTTCCCCTGAGAATCTTCAAGAATGCATTCGTTTGACAGAGGAGTTTCGGCTGCTTCCCAAAAACCATAGATCTAAGGAAGATAAATTGGAGATTTCACTTTTCATGTATGAAGATAAAGAAGATGGCACTATACGCTGCAGATGTTGCTATAAGTGA 5790 0.4111 MVESNERFRTCSRSGSSGWKCREMAMSGRAMCEKHYLYNLQRSSKNRMENASGGTTLKQNKSKRKRPKIEENSLSGHAGPVRNGNHNGGSNVVEEIVRLFGEVQGNGVNLPRKSMDIGYPGEGQQVQVGGFVEECENMSQIPGDRVEFQVGHSEGGNQHAGPGRHDDPDQRWCSEHACGNSGGVADAGQEEHISGSGADVCENDAMGIPAAVIEGLICEVSSGSLRDQGFQALLCQDRDCEDNLTSIGENAYDFKREVVRCVGIPDVYGKCEDEKVGNLKVPGSKGKRGRPKGSKNKKRIVVVKERRELLSAANNEEGGEALRPHVKRGRPKSSKNENKQLIREKSTTMNGQTVNRNESADTNAINCLEVVECERPIIIDEIYKVLPVEEDASNEDGGKVARLKKHDQSKGLKNKEKNSVCASNEGVCEIARPKKRGRPKGSKNKKESTECASDVDAGDIELPKKPGRPKGSKNKMKSIMCASNAGAADIELPKKPGRPKGSKNKKKSIVCASNAGAGDIETPKKRGRPKGSKNKKESIVCVSNVGAGDIETPKKRGRPKGSKNKESIVCQKYLGRSSDIQFEDGGGVGTVWTTGLENAKLALLCEEEKGVPAVPTYHNQDRNEIAQPTVKRGRPRGSRNKKKKLADQINLERPGKVMFVDKGEQDIGSLAEITGSKKCGYVDLQQKKSEGRNFVALQNEGMPCELVSVNDGSKITVKAVGWEYCRATHVGDGDWDMPTKAAGDNEVLNKNHVKSKHGRPKGSKRKKNIASEGKEHLTRKIIGGCNKETESIRLAGPKIGITNSQVEVDKEFPCSRSCEFGSGNKFNKGKIKCGRTKSSGKKEKETLCPLDSEIERHGNVAEKDGRTSAEASCRNDIDQQKDKHGQPRSLRNKIQPHQLRSSRGKAPTVAAVEDESEPVEVIYELRRNERSNNKQNRPLKNKKRISFGRVVEDSKVPGNKKMKNKWLKYGSGNIQKRSSERLRKMSNLGLESSGLMDLTLEVTCFYIPDMCNMNWYPEKTREEIENACPFCLGNCNCRMCLKEDVSVVNGSVESDTEINLQKLLYLLKKTLPLLQHIGQEQRSELKVEANMRGSQLMEEDIMQSQIDDDDRVYESDNCNTSIVNFHRSCPNPNCSYDLCLTCCMEIRNELQFGDIPTNGNEGKAGISSGSSSWKAEINGQIPCPPKANGGCGAAMLSLRRLFEANWVDKLIRNAEELTIKYQPPNFDFTKGCLLCHNFGIDGVRDSVKRAASREKSHDNFLYCPNAIPMGDTEFEHFQLHWIRGEPVIVRNAFEKACGLSWDPMVMWRAFRGAKRILKEEAAVFKAIDCLDWCEVEINILQFFKGYLEGRRYRNGWPEMLKLKDWPPSNLFEECLPRHGAEFIAMLPFSDYTHPKSGILNLATKLPVVLKPDLGPKTYIAYGSLEELGRGDSVTKLHCDISDAVNILTHTAEVKRPPWQSKIINKLRKKYEAEDMCELNARKNKALGACGRKPKRRHLDKNTSYKSPGKEDNTVGDSALLRSRGKEGENMNEQWSRSMVLGPSRSSRAASSLGCSASPKSKVSVNACGQSVHDLNTRVQHFDRNSQENNSRFCFIEDQPDTYTFFIDLNLPTPPVWINQENLTNRAEQPELKDRCIRAGQLPNRIIPNIKHNHDSSCAGKNVSGFFFTQEPNLGMQHPSVCGNVGDAYSSLKEVTNTGCDSSLHESYCHGPIRDIGKYLNSRKRDRPSTRTEEARSFNRLNSSGTCSEIKTDKIESIKNDMRTTKDLLKNDDGSETQYGSAVWDIFRRQDVPKLMEYLNKHHREFRHTNNLPVNSIIHPIHDQTLYLNDRHKKQLKEEFGVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPENLQECIRLTEEFRLLPKNHRSKEDKLEISLFMYEDKEDGTIRCRCCYK 1929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1334 1929 MobiDBLite consensus disorder prediction 43 58 - -
Glsi10g1334 1929 MobiDBLite consensus disorder prediction 320 342 - -
Glsi10g1334 1929 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 455 1910 IPR045109 GO:0032454|GO:0033169
Glsi10g1334 1929 SMART AT_hook_2 433 445 IPR017956 GO:0003677
Glsi10g1334 1929 SMART AT_hook_2 327 337 IPR017956 GO:0003677
Glsi10g1334 1929 SMART AT_hook_2 523 535 IPR017956 GO:0003677
Glsi10g1334 1929 SMART AT_hook_2 629 641 IPR017956 GO:0003677
Glsi10g1334 1929 SMART AT_hook_2 493 505 IPR017956 GO:0003677
Glsi10g1334 1929 SMART AT_hook_2 463 475 IPR017956 GO:0003677
Glsi10g1334 1929 SMART AT_hook_2 553 565 IPR017956 GO:0003677
Glsi10g1334 1929 SMART AT_hook_2 285 297 IPR017956 GO:0003677
Glsi10g1334 1929 MobiDBLite consensus disorder prediction 343 357 - -
Glsi10g1334 1929 SUPERFAMILY Clavaminate synthase-like 1273 1910 - -
Glsi10g1334 1929 MobiDBLite consensus disorder prediction 854 913 - -
Glsi10g1334 1929 MobiDBLite consensus disorder prediction 391 414 - -
Glsi10g1334 1929 MobiDBLite consensus disorder prediction 313 357 - -
Glsi10g1334 1929 ProSiteProfiles WRC domain profile. 5 49 IPR014977 -
Glsi10g1334 1929 ProSiteProfiles JmjC domain profile. 1394 1894 IPR003347 -
Glsi10g1334 1929 MobiDBLite consensus disorder prediction 854 889 - -
Glsi10g1334 1929 MobiDBLite consensus disorder prediction 443 468 - -
Glsi10g1334 1929 FunFam Transcription factor jumonji (JmjC) domain-containing protein 1716 1903 - -
Glsi10g1334 1929 MobiDBLite consensus disorder prediction 432 539 - -
Glsi10g1334 1929 Pfam JmjC domain, hydroxylase 1778 1877 IPR003347 -
Glsi10g1334 1929 MobiDBLite consensus disorder prediction 151 170 - -
Glsi10g1334 1929 MobiDBLite consensus disorder prediction 43 88 - -
Glsi10g1334 1929 Gene3D Cupin 1263 1511 - -
Glsi10g1334 1929 Gene3D Cupin 1729 1903 - -
Glsi10g1334 1929 SMART cupin_9 1375 1894 IPR003347 -
Glsi10g1334 1929 MobiDBLite consensus disorder prediction 391 418 - -
Glsi10g1334 1929 MobiDBLite consensus disorder prediction 752 773 - -
Glsi10g1334 1929 MobiDBLite consensus disorder prediction 1487 1542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1334 Glsi-ChrGlsi10 9041046 9052429 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi10g1334 JmjC 1.2e-16 CL0029