Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1331 ATGGACTTGGATAGCATTGAATGTGTTTCATCTTCGGATGGCATGGACGAGGATGAGATCCAACACCATAGTCTGCATCCCCATCCTCATCATCACTCTGAATTTTCTTCCACAAAACCTCGCAACGGCGGCACAAATAACAATAATATTATGGGTCCTACGGCCATTGCTCCGGCAACCAGTGTCCACGAGTTGCTGGAATGCCCTGTCTGTACTAATTCAATGTACCCACCAATTCATCAGTGCCACAATGGGCACACACTCTGTTCCACATGTAAAACAAGGGTTCACAATCGATGTCCGACGTGTAGACAAGAGCTAGGAGATATCAGGTGTCTAGCACTGGAAAAGGTGGCTGAATCACTCGAGTTACCTTGCAAGTACTACGCCCTCGGATGCCCAGAAATCTTTCCATACTACAGCAAGCTCAAGCATGAGGCAGTATGCAATTTCAGACCATACAATTGTCCTTATGCTGGTTCAGAATGTTCTGTTGGTGGGGATATCCCTTTCCTCGTTGCTCATTTGAGAGATGATCATAAGGTAGACATGCACACAGGTTGCACCTTCAACCATCGTTATGTCAAGTCCAATCCCCGCGAAGTAGAGAATGCAACTTGGATGCTCACGGTGTTTCATTGTTTTGGCCAATACTTCTGCCTTCATTTTGAAGCTTTTCAGCTTGGCATGGCTCCTGTTTACATGGCATTCCTTCGTTTTATGGGTGATGAGAATGAGGCTCGGAACTATAGCTATAGCCTAGAGGTCGGGGCAAATAGCAGGAAACTTATTTTTGAGGGCACTCCACGAAGTATTCGGGATAGCCATCGTAAAGTCAGGGATAGCCATGATGGTCTCATTATCCAACGTAATATGGCCCTATTTTTCTCTGGTGGGGATAGGAAGGAGCTGAAACTTAGAGTTACAGGAAGAATATGGAAGGAACAACAGAATCAAGATGCTGGGGTGTGCATACCAAACCTTTGTAACTGA 993 0.4562 MDLDSIECVSSSDGMDEDEIQHHSLHPHPHHHSEFSSTKPRNGGTNNNNIMGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYALGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSECSVGGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANSRKLIFEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNQDAGVCIPNLCN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1331 330 ProSiteProfiles Zinc finger RING-type profile. 68 104 IPR001841 -
Glsi10g1331 330 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 45 315 - -
Glsi10g1331 330 Pfam Seven in absentia protein family 110 309 IPR018121 GO:0005737|GO:0006511|GO:0007275
Glsi10g1331 330 MobiDBLite consensus disorder prediction 1 54 - -
Glsi10g1331 330 FunFam E3 ubiquitin-protein ligase SINAT3 120 176 - -
Glsi10g1331 330 SUPERFAMILY TRAF domain-like 121 313 - -
Glsi10g1331 330 MobiDBLite consensus disorder prediction 15 37 - -
Glsi10g1331 330 MobiDBLite consensus disorder prediction 38 54 - -
Glsi10g1331 330 ProSiteProfiles Zinc finger SIAH-type profile. 121 181 IPR013010 GO:0008270
Glsi10g1331 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 173 IPR013083 -
Glsi10g1331 330 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 174 309 IPR008974 GO:0005515
Glsi10g1331 330 CDD RING-HC_SIAHs 66 104 - -
Glsi10g1331 330 SUPERFAMILY RING/U-box 58 110 - -
Glsi10g1331 330 FunFam E3 ubiquitin-protein ligase SINAT5-like 177 309 - -
Glsi10g1331 330 CDD Sina 182 310 - -
Glsi10g1331 330 FunFam E3 ubiquitin-protein ligase SINAT3 11 119 - -
Glsi10g1331 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 120 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1331 Glsi-ChrGlsi10 9026095 9029283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1331 59 316 C3H Transcription Factor Family AT2G41980 81.395 1.35e-161 451