Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1326 ATGAACTACGGCAGGCTCCAACCCTCCGACCCGGGTGGCTCCTCCAGGAGTTTAGACATTTCTATTGCTAAGCCAAGCTCCGGGTCCAAGAAGAAACTCATCTTCCTGTCTCTACTCGCCGTCGTTTTGATCGTCGCCTCCGCTGTCTCCGCGGTGATTGTGGTCCAAATCCGTGGCCGTGCTTCCAATCAAAATGGCCCGGGCATCCGTGGGAGGCCCTCCCAGGCCATTTCCCGGACCTGCAGCAAAACCCAGTTCCCCACGCTCTGCGTGAACACGCTCCTCGAGTTCCCGGGTTCCACCGCCGCGTCGGAGCAGGACCTGGTCCACATTTCCTTCAACGTGACCCTGCGGCACCTGAGCAAAGCTCTCTACTCCTCCACAGGGATCTCGTACGTCCAGATGGATCCACGTGTGCGATCGGCGTACGAGGACTGCCTGGAGCTCCTGGAGGACTCGGTGGACGCGCTTTTGCGCTCCCTCACCTCCGTCGCGCCCTCCCCATCTGACGGCAGCACCAGGGCCGGCGGGTCCACAGAGGACGTGCTGACGTGGCTCAGCGCCGCCCTCACGAATCAAGACACGTGTTGGGAGGGGTTTGAGGACACAAGCGGGAGCGTGAAGGATCAGATGGCGAATAATTTGAAGGACTTGTCGGAACTGGTGAGCAATAGTCTGGCGATATTCTCGGCGAGCGGCAATGACGACTTCGCGGGGGTTCCGATACAGAACAGAAGAAGATTAATGGGAGAGGAGGAGGATGTATCGGGTAAATTCCCAACATGGTTAAGCAGAGGAGACAGGAGATTGTTGAGTTTGCCGGTGTCGGCGGTTCAAGCCGATATCACTGTGTCGAAGGATGGGAGTGGAACGGTAAAGACGATAGCGGAGGCGATTAAGAAGGTGCCCGAGCACAGTAGCCGCCGGATCATTGTGTACGTGAAGGCAGGAAGGTACGAGGAGGATAATTTAAAGGTGGGGAGGAAGAAAACCAATGTGATGTTCATGGGAGACGGGGAGGGTAAGACAGTCATCACAGGTGGAAAAAATTTTGCGCAAGGCACGACCACTTTCCACACCGCTTCCTTCGCTGCTTCTGGTGCTGGTTTCATTGCACGAGATATGACGTTTGAGAACTACGCCGGACCGGGCAAGCACCAAGCGGTGGCCCTCCGCATCGGTGCTGACCATGCGGTGGTGTACCGCTGCAACATCATCGGATACCAAGACACATGCTATGTCCACTCCAACCGTCAGTTCTTTAGGGAGTGTGACATCTATGGAACCGTAGACTTCATATTTGGGAATGCGGCTGTGGTTTTTCAAAAATGCAACCTCTATGCTCGTAAGCCCTTGCCCCAACAGAGGAATACCATCACGGCCCAAAACAGAAAAGACCCGAATCAGAACACGGGTATCTCCATCCACGATTGCCGGATCCTAGCCACCTCCGAGCTGGAGGCAGCCAAGGGAAGTATCCCTACCTATTTGGGTCGTCCATGGAAATTATACTCTAGAACCGTGTACATGCTATCCTACATGGGTGACCACATACACCCACGTGGATGGCTGGAGTGGAATGGTAATTTTGCACTGAACACATTGTACTATGGAGAGTACATGAATTCTGGGCCGGGTGCAGCAATCGGGCAACGAGTAAGATGGCCCGGGTACCGGGTCATCACATCCACCGTGGAGGCAAGCAGGTTCACGGTGGGCCAATTCATAGCGGGTTCGTCGTGGTTGCCGTCGACGGGAGTGGCATTTGTGGCTGGGTTATCCACTTAA 1788 0.5537 MNYGRLQPSDPGGSSRSLDISIAKPSSGSKKKLIFLSLLAVVLIVASAVSAVIVVQIRGRASNQNGPGIRGRPSQAISRTCSKTQFPTLCVNTLLEFPGSTAASEQDLVHISFNVTLRHLSKALYSSTGISYVQMDPRVRSAYEDCLELLEDSVDALLRSLTSVAPSPSDGSTRAGGSTEDVLTWLSAALTNQDTCWEGFEDTSGSVKDQMANNLKDLSELVSNSLAIFSASGNDDFAGVPIQNRRRLMGEEEDVSGKFPTWLSRGDRRLLSLPVSAVQADITVSKDGSGTVKTIAEAIKKVPEHSSRRIIVYVKAGRYEEDNLKVGRKKTNVMFMGDGEGKTVITGGKNFAQGTTTFHTASFAASGAGFIARDMTFENYAGPGKHQAVALRIGADHAVVYRCNIIGYQDTCYVHSNRQFFRECDIYGTVDFIFGNAAVVFQKCNLYARKPLPQQRNTITAQNRKDPNQNTGISIHDCRILATSELEAAKGSIPTYLGRPWKLYSRTVYMLSYMGDHIHPRGWLEWNGNFALNTLYYGEYMNSGPGAAIGQRVRWPGYRVITSTVEASRFTVGQFIAGSSWLPSTGVAFVAGLST 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1326 595 Pfam Pectinesterase 281 578 IPR000070 GO:0030599|GO:0042545
Glsi10g1326 595 FunFam Pectinesterase 73 232 - -
Glsi10g1326 595 PANTHER PECTINESTERASE 44 583 - -
Glsi10g1326 595 SUPERFAMILY Pectin lyase-like 276 592 IPR011050 -
Glsi10g1326 595 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 230 IPR035513 -
Glsi10g1326 595 SMART PMEI_2 72 228 IPR006501 GO:0004857
Glsi10g1326 595 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 231 IPR035513 -
Glsi10g1326 595 Pfam Plant invertase/pectin methylesterase inhibitor 76 228 IPR006501 GO:0004857
Glsi10g1326 595 FunFam Pectinesterase 275 593 - -
Glsi10g1326 595 CDD PMEI-like_3 81 231 - -
Glsi10g1326 595 NCBIfam pectinesterase inhibitor domain 70 229 IPR006501 GO:0004857
Glsi10g1326 595 ProSitePatterns Pectinesterase signature 2. 426 435 IPR033131 -
Glsi10g1326 595 Gene3D - 275 593 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1326 Glsi-ChrGlsi10 8996147 8998731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1326 1 594 Carbohydrate Esterase AT5G53370 66.221 0.0 820