Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1320 ATGATAATCAAGCGGAACCTGAAAACCCAAATGCCGAGTCTGAAACGGTGCAAACTCGGTGGCTCGGTGGGTGAAGACGACGACTCTTCGGCGGCTCGGAAGAAGAGGAAAACTAATGGGTATTACCCTCTGAATCTTCTCGGTGATGTGGCTGCTGGTATACTTCCTGTGAGCTTCCATGGCTTACTAAGCGCTGGTGTTTCTGAGAAGGGCTTTTCTGCATCATGGTGTACCGAAGTCTCGTGCTCCCCTGTTGAAGTGGAGTCAAAGTCGAAGGGTGAGAACTCTGTCAGAGCTAAGATGAATCGGCCTGCGGAGGAACCACGGCCACCGCTGGTCAGAACGTCAAGAGGTCGAGTTCAGGTACTACCTTCGCGTTTTAACGACTCGGTTATTGAGAATTGGAAGAAAGAGAGTAAGACTAGCTCTCGGGATTATAGTTTTGAAGACGAACTCGATAGTCGAAAGGAAAAACATAGTTTTAGAACACCGAAATCATGCAATCAGAATACAAGAAAAGGGAGAAACGATGATAAAATCGGCTATAAGTCTCGCAAATATTCAGCATTGTGTGAAGAGGAGGATGAGACAAGAGAGGATGGGCGTGTAAGATGTAGAAGTTTGGATATGAGGAAGTATTCAACTTCACGTAGTGCCCTCACCTCAAAGCGCGAGCAATTAAATATGGATGAGAGACGCCGATTTGTGGATATGGAGGAAGCTGATGTTACAGGCAATGAGAGATTTTTGAAGGCGAATGACGAGAAAAAAGGTGAATTATATGGACCTGAAGACTTTTATGCTGGTGATATAGTGTGGGCCAAAGCGGGGAAGAAGGAGCCTTTTTGGCCAGCCATTGTCATTGATCCAATGTCTCAGGCACCTGAGCTGGTCCTGAGGTCTTGTATAGCTGATGCAGCTTGTGTGATGTTTCTGGGATACGCAGCGAATGAAAATCAACGGGACTATGCATGGGTGAAGCGGGGGATGATTTTTCCATTTATAGATTATGTAGATAGGTTTCAGGGACAGATTGAGTTGAGTTATTATAATCCCTCTGATTTTCAAGTGGCAATAGAGGAGGCATTCTTGGCAGATCGGGGATTTACAGAGAAGTTGATAGCAGATATAAATATAGCAGCTGGTAACACAGGTTATGATGAAACCATTCTGAAAGGCATTCAGGTGACCAGTGGTTCAAAGCAGTATGCAGGATGTCACTTTTTGAACCAGGATTTATTTGATAAGAGGAAAGACACACGACCCTGCGAAGCCTGTGGATTGGGTCTTCCTTTCAAAATGTCAAAGAAAACGAAGGATTCAACTCCTGGTGGGCAATTTCTATGTAAAACGTGTGCTAGGTTAACAAAATCAAATCATTATTGTGGCATATGCAAGAAAATTTGGAATCATTCAGATAGTGGAAGCTGGGTGCGCTGTGACGGATGTAAGGTTTGGGTGCATGCTGAATGCGACAAAATTTCCAACAACCTTTTCAAGAATCTTGGAGGCACTGATTATTACTGCCCTACTTGTAAAGCAAAGTTTGATTTTGAATTATCTGATTCAGAAAAATCACAGCCAAGAGTCAAGTGGAACAAAAACAGTGGGCAGCTAGTGCTACCAAACAAAGTCACAGTTCTGTGCAATGGTGTGGAAGGCATATATTTTCCTAGCCTTCACTTAGTTGTGTGCAAGTGTGGCTTTTGTGGCACAGAAAAGCAACCTCTTAGTGAATGGGAAAGACACACAGGTTCCAAATCAAGAAATTGGAGAACAAGTGTTAGGGTGAAAGTCTCCATGCTGCCACTGGAACAATGGATGCTGCAGTTGGCAGAATTTCATGCCAATGCCCTAGTTTCTGTCAAACCTAAAAAACCTTCTTTAAAAGAGAGGAAGCAGAAGTTGCTTACATTTTTGCGAGAAAAGTATGAACCGGTTTATGCTAAGTGGACAACAGAACGGTGTGCTGTATGTAGATGGGTTGAAGATTGGGACTACAATAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCAAGACTTCACGTCATGGGTTTGTAAAGCTTGTGAAACACCTGATATCGAACGAGAGTGTTGTCTTTGTCCTGTAAAGGGCGGTGCTCTAAAGCCAACTGATGTGGACACATTATGGGTTCATGTCACTTGTGCCTGGTTTCGACCTGAAGTGTCTTTTGCTAGTGATGAAAAGATGGAGCCTGCTTTGGGCATTCTGTGTATTCCATCAAATTCTTTCGTGAAGATTTGTGTCATATGTAAGCAAATTCACGGTTCATGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCGAGGGCTGGGTATCGCATGGAGTTGCATTGTTTGGAGAAAAATGGTAGGCAGACAACAAAAATGGTTTCTTATTGTGCTTACCACAGGGCACCAAATCCAGACACGGTTTTGATTATGCAAACCCCTCTTGGGGTTATTTCAACCAAAAGCCTTCTCCAAAATAAGAAAAAATCTGGGTCAAGGTTAATTTCATCTAATAGAGCAAAGCTAGAAGACACTCCGCCTGTTGACAACACCGAGCATGAACCATTTTCTGCTGCTAGGTGCCGTATCTTTCAAAGAACAAATCTTACCAAAAAGAGAGCAGCAGATGAAGCCATTTCTCATAGAGCGAAGGGTCACTGCCATCATCCTTTAGATGCAATACAGAGTTTAAATGCATACAGGGAGGTAGAGGAGCCTCAGACATTTTCTTCTTTTAGAGAACGTCTTCACCACTTACAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTAGGAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAGCAAGTGAGACGCAGCATCGCGGATTTGAGGGAGGCACGCTATAAGATAGAAGGCAAAGACTGCTATCTTTTCAAGATAAGTGAAGAAGTTGTGGTAGATGCTACTGATAAAGGAAATATAGCCCGGCTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGAATTATGAGTGTGGGTGATGAAGAGAGCCGGATTGTACTCATTGCCAAGACTAATGTACCTGCTGGTGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAAAACAAAGTCCCATGCTTATGTAAAGCTCCAAATTGCCGGAAATTCATGAATTAG 3267 0.4304 MIIKRNLKTQMPSLKRCKLGGSVGEDDDSSAARKKRKTNGYYPLNLLGDVAAGILPVSFHGLLSAGVSEKGFSASWCTEVSCSPVEVESKSKGENSVRAKMNRPAEEPRPPLVRTSRGRVQVLPSRFNDSVIENWKKESKTSSRDYSFEDELDSRKEKHSFRTPKSCNQNTRKGRNDDKIGYKSRKYSALCEEEDETREDGRVRCRSLDMRKYSTSRSALTSKREQLNMDERRRFVDMEEADVTGNERFLKANDEKKGELYGPEDFYAGDIVWAKAGKKEPFWPAIVIDPMSQAPELVLRSCIADAACVMFLGYAANENQRDYAWVKRGMIFPFIDYVDRFQGQIELSYYNPSDFQVAIEEAFLADRGFTEKLIADINIAAGNTGYDETILKGIQVTSGSKQYAGCHFLNQDLFDKRKDTRPCEACGLGLPFKMSKKTKDSTPGGQFLCKTCARLTKSNHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISNNLFKNLGGTDYYCPTCKAKFDFELSDSEKSQPRVKWNKNSGQLVLPNKVTVLCNGVEGIYFPSLHLVVCKCGFCGTEKQPLSEWERHTGSKSRNWRTSVRVKVSMLPLEQWMLQLAEFHANALVSVKPKKPSLKERKQKLLTFLREKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVCKACETPDIERECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILCIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQNKKKSGSRLISSNRAKLEDTPPVDNTEHEPFSAARCRIFQRTNLTKKRAADEAISHRAKGHCHHPLDAIQSLNAYREVEEPQTFSSFRERLHHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYKIEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDEESRIVLIAKTNVPAGDELTYDYLFDPDEPDENKVPCLCKAPNCRKFMN 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1320 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 704 IPR013083 -
Glsi10g1320 1088 ProSiteProfiles Zinc finger PHD-type profile. 653 704 IPR019787 -
Glsi10g1320 1088 ProSiteProfiles Extended PHD (ePHD) domain profile. 707 822 IPR034732 -
Glsi10g1320 1088 FunFam Histone-lysine N-methyltransferase 643 704 - -
Glsi10g1320 1088 SUPERFAMILY FYVE/PHD zinc finger 654 718 IPR011011 -
Glsi10g1320 1088 Pfam PHD-zinc-finger like domain 709 821 - -
Glsi10g1320 1088 SUPERFAMILY SET domain 939 1085 IPR046341 -
Glsi10g1320 1088 ProSitePatterns Zinc finger PHD-type signature. 656 701 IPR019786 -
Glsi10g1320 1088 MobiDBLite consensus disorder prediction 88 113 - -
Glsi10g1320 1088 Gene3D SET domain 841 1088 IPR046341 -
Glsi10g1320 1088 CDD PHD_TCF19_like 462 512 - -
Glsi10g1320 1088 SMART set_7 946 1069 IPR001214 GO:0005515
Glsi10g1320 1088 Pfam PHD-finger 668 702 - -
Glsi10g1320 1088 ProSiteProfiles SET domain profile. 946 1063 IPR001214 GO:0005515
Glsi10g1320 1088 FunFam Histone-lysine N-methyltransferase 705 824 - -
Glsi10g1320 1088 MobiDBLite consensus disorder prediction 143 179 - -
Glsi10g1320 1088 SUPERFAMILY Tudor/PWWP/MBT 259 365 - -
Glsi10g1320 1088 ProSiteProfiles Zinc finger PHD-type profile. 459 515 IPR019787 -
Glsi10g1320 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 456 516 IPR013083 -
Glsi10g1320 1088 FunFam Histone-lysine N-methyltransferase 921 1088 - -
Glsi10g1320 1088 SMART PostSET_3 1072 1088 IPR003616 -
Glsi10g1320 1088 SMART PHD_3 655 702 IPR001965 -
Glsi10g1320 1088 SMART PHD_3 461 513 IPR001965 -
Glsi10g1320 1088 SMART PHD_3 766 822 IPR001965 -
Glsi10g1320 1088 PANTHER PHD FINGER PROTEINS 15 530 - -
Glsi10g1320 1088 Pfam PWWP domain 269 362 IPR000313 -
Glsi10g1320 1088 MobiDBLite consensus disorder prediction 143 163 - -
Glsi10g1320 1088 Gene3D - 263 367 - -
Glsi10g1320 1088 CDD ePHD_ATX3_4_5_like 710 821 IPR041955 -
Glsi10g1320 1088 CDD PHD_ATX3_4_5_like 655 701 IPR042011 -
Glsi10g1320 1088 MobiDBLite consensus disorder prediction 91 113 - -
Glsi10g1320 1088 ProSiteProfiles Post-SET domain profile. 1072 1088 IPR003616 -
Glsi10g1320 1088 SUPERFAMILY FYVE/PHD zinc finger 458 516 IPR011011 -
Glsi10g1320 1088 CDD SET_SETD1-like 933 1084 - -
Glsi10g1320 1088 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1088 IPR025780 -
Glsi10g1320 1088 ProSiteProfiles PWWP domain profile. 268 337 IPR000313 -
Glsi10g1320 1088 Pfam SET domain 957 1062 IPR001214 GO:0005515
Glsi10g1320 1088 CDD PWWP_AtATX3-like 267 371 - -
Glsi10g1320 1088 Pfam PHD-finger 461 514 IPR019787 -
Glsi10g1320 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 705 824 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1320 Glsi-ChrGlsi10 8945915 8956295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1320 656 821 C2H2 Transcription Factor Family AT3G14740 34.286 9.56e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi10g1320 zf-HC5HC2H_2 3.8e-26 CL0390