Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1312 ATGATTTGCTATTCCAGAACTTGCTTGTTGATCTTGGTATTGCTTCTGCTTGAGAACGTCGGAGTGTGCCACTGTGACTGCCAGGAATTAAGGTGCGGAAGTCATGGTCCGTCTGTCCGGTTTCCCTTCCGACTCAAAGAGAGGGATCCCCACCACTGTGGCTATCCCGGCTTTGATCTGACTTGTACAAATGATCATGAGACACTGCTTGAGCTCCCCACAAATTCGGGTCCTGTAAAACTCTTGGTCAAACATATAGATTACGCATCTCAGATGCTTCGAGTATATGACCCGCAAAGTTGCCTTCCCAGACAGTTTCTTAAACTACACCAGCTGTCAATTTCACCATTCATATCTGAGCCCCGAGCGGAAACATCTGACATCGCTTTCTTCAATTGTTCTTCAGTACATACATCTTGCCCCATTTATGCTGCTAACCTCTTTGACTCTTTCTTTAGACCAGACCTACTATTCTGCACCAAAATGTTTAACATTTCCTCAAGCCTCGTTTCCTTCTACAGCCTAGAGAAACATTATTTGGATTTGTGGTGGTCGAAACCAAATTGTAGTTGGTGTGAAGCCAAAGGAATGAAATGTAAACTGAACAACAACGGCACTGAAAATGATACTGAATGTTTTCAAGATGATCCCAAGATACCTAAATCAACTATTATAGCTGCTGCAGGTGTTACAGGTTCAATTGTGCTGCTGTTGCTGCTCATTTCATTCTTTCAAATCTACAAATATTTTAGAATGAAAGGAGAGGATCAGGCGAGAGTTGAAAATTTTTTGGATGACTACAGGGCACTTAAGCCTACTAGATTCTCTTATGTTGATCTTAAGCGAATTACAAATCATTTTAAGGACAAGTTAGGTCAAGGAGCTCATGGATCAGTCTTTAAAGGTAAGCTATCCACTGAAATTGTGGTGGCCGTCAAGATACTCAATAACTCAGAGGGAGATGGCAAAGACTTCATAAATGAAGTGGGGACAATGGGTAAAATCCATCACGTCAACGTGGTTCGCTTGCTGGGCTTTTGTGCTGATGGATATCACCGTGCTCTTGTCTTTGATTTCTTTCCAAACGGTTCCTTTCAGAACTTCATATCTCCCCCACATAAAAAGGATAGCTTCCTTGGATGGCACAAGCTACAACAAATAGCTCTTGGCATAGCCAAAGGGATTGAGTATCTTCACCAGAGCTGTGATCATCGAATTCTTCACTTTGACATCAACCCTCATAATGTGTTATTGGATCACAACTTCACTCCGAAGATTTCTGATTTTGGTCTAGCCAAATTGTGTTCTAAAAATCACAGTACAGTGTCAATAACTGCAGCTAGAGGAACCCTAGGCTATATTGCACCTGAAGTTTTTTCTAGAAGTTTTGGGAATGTGTCGTATAAGTCAGATATTTACAGTTATGGCATGTTGCTAATAGAAATGATTGGAGGAAGGAAGAATACAAACACAGGAGAGGAAAGATTCCAAGTTCTATATCCAGAATGGATTCACAATTTGGTTGAAGGATCGGACATAAACGTCAATGTAGAAAATGAAGAAGATATTAGAATTGCAAAGAAACTAGCAATTGTGGGACTTTGGTGCATTCAGTGGCACCCAGTGGACCGGCCATGCATAAAAACAGTGGTACAAATGTTGGAAACAGGAGGAGATAAGTTAAAGGTGCCCCCTATTCCTTTTGACTCCATCCTTTCTACAAATACTGCTTCAGTTATTCCCACAAGACATCTAGGTTTAGAGTCGGAAGTGATTCATGAATTAGATTGA 1791 0.4109 MICYSRTCLLILVLLLLENVGVCHCDCQELRCGSHGPSVRFPFRLKERDPHHCGYPGFDLTCTNDHETLLELPTNSGPVKLLVKHIDYASQMLRVYDPQSCLPRQFLKLHQLSISPFISEPRAETSDIAFFNCSSVHTSCPIYAANLFDSFFRPDLLFCTKMFNISSSLVSFYSLEKHYLDLWWSKPNCSWCEAKGMKCKLNNNGTENDTECFQDDPKIPKSTIIAAAGVTGSIVLLLLLISFFQIYKYFRMKGEDQARVENFLDDYRALKPTRFSYVDLKRITNHFKDKLGQGAHGSVFKGKLSTEIVVAVKILNNSEGDGKDFINEVGTMGKIHHVNVVRLLGFCADGYHRALVFDFFPNGSFQNFISPPHKKDSFLGWHKLQQIALGIAKGIEYLHQSCDHRILHFDINPHNVLLDHNFTPKISDFGLAKLCSKNHSTVSITAARGTLGYIAPEVFSRSFGNVSYKSDIYSYGMLLIEMIGGRKNTNTGEERFQVLYPEWIHNLVEGSDINVNVENEEDIRIAKKLAIVGLWCIQWHPVDRPCIKTVVQMLETGGDKLKVPPIPFDSILSTNTASVIPTRHLGLESEVIHELD 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1312 596 Pfam Protein kinase domain 287 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1312 596 SUPERFAMILY Protein kinase-like (PK-like) 267 555 IPR011009 -
Glsi10g1312 596 Gene3D Phosphorylase Kinase; domain 1 260 359 - -
Glsi10g1312 596 ProSitePatterns Protein kinases ATP-binding region signature. 291 313 IPR017441 GO:0005524
Glsi10g1312 596 ProSiteProfiles Protein kinase domain profile. 285 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1312 596 FunFam PR5-like receptor kinase 360 565 - -
Glsi10g1312 596 Pfam Wall-associated receptor kinase galacturonan-binding 27 97 IPR025287 GO:0030247
Glsi10g1312 596 Gene3D Transferase(Phosphotransferase) domain 1 360 563 - -
Glsi10g1312 596 PANTHER RUST RESISTANCE KINASE LR10-RELATED 257 571 IPR045874 GO:0004672
Glsi10g1312 596 FunFam serine/threonine-protein kinase PBS1-like 253 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1312 Glsi-ChrGlsi10 8890280 8892165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1312 251 576 Receptor kinase-like Gene Family AT1G66910 48.802 4.55e-104 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Glsi10g1312 Pkinase 1.4e-45 CL0016