Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1311 ATGTTGACAATCACCTGCGTTTGGGGAGGAGGAAGAAGCTCAGGGGTGGTGTTGGTGTTTATTATGATTGTACTACGACTCCGGCAAAGTTGGGGTGGTTGTGTCTCATCTTGCGGCAAAATGGGCAACATAAGCTATCCATTTCGACTCAAAGACGACCCACACAATTGTGGGGAGAAGAGGTACGAGTTAGAATGTATCAACCAAGTTGTGGTATTACGCTTATTTTCGGGAGAATACTATGTGGAGTCAATCAATTACACTGACTACACAATCCGACTTGTGGATCCCAACATTCAACATTCGGATTGCTCCTCCCTCCCTCGCTACCTCCTTTCCATATTCAATTTCAGTGACAATGAGTATGATGCATATCGTGCCACTCAAATTCGAGATTACAGTACAGAACAACTATTTCGACATATAATTTACTTGGATTGCCCAACTCCAGTGCGCTCCGATGAATACCCTTATAATTACGTGAACACTTGTGATTGCTTGGATGATCCCAATATTTACGCCATTGAAATTGAGGACAACTACTTTCCCGTAAGGTCATTGAAAAATGGGTGCCATGTGAAGCTGGTTGCTCCCATATCCAAACCCAAATCCACTTATTACGGATACACCGCCTCATACCGTGCTATTCACAGCGAGCTACTCTATGGATTTGAGCTTTCCTGGTTGCATGCTTCTTGTGATTTTCATTGTGGATTCCGACCTTGCTTCTTCAACACCGCCACCCAAAGTATTCAGTGTCACTCTGCCGACCACGGTTATAGAAGTTTGGAATATTGTCAAGTTTACTCTTTTGATGATTTACCCGTCCTAGGACTACTCGCCGCAATAACACTTGGTAAAATAGGACGAATACCCAACCTACGACAAGAAATTATAGGACGATATGTCCTGGCACCGTTCTTGTTTGTTAGACTTCTGCTTGGAGTTACATTGGTGATTTCATTATTGTTATTCAAATGGCGAAGAAGACATTTGTCAATGTACGAAAATATTGAACACTTTCTGCAACACAGTAACCTCAACCCCATTAGGTACTCATACAGAGAAATTAAGAAGATGACCAATGGTTTCAAAGTGAAGCTGGGTGAAGGAGATTTCGGCTCTGTATACAAGGGTAAACTCCGCAGTGGGCCTTATGTAGCAATTAAGATGCTGAGTAAATCCAAAGCTAATGGCCAAGACTTTATCAGTGAAGTAGCAACCATTGGACGAATACACCATGTCAATGTGGTACGCCTTGTTGGGTTTTGTGTTGAGGGAACAAAGCGTGCTCTTGTCTATGAATTTATGCCTAATGGATCTCTGGATAAATTCATTTTCTCAAGAGAAGGAAGCATTCCCTTAAGTTACCAGAAAATATATGAAATATCTCTTGGAGTGGCTCGTGGAATTTCTTACTTGCACCAAGGCTGTGACATGCAAATTCTGCATTTTGATATCAAACCCCATAACATTCTTCTAGATGATAACTTCATCCCAAAGGTTTCAGATTTTGGACTCGCAAGATTATACCCGGTTGATCATAGCATTGTGACATTGACTGCTGCAAGAGGAACAATAGGGTACATGGCTCCTGAATTGTTCTACAAAAATATAGGGGGAGTGTCCTATAAGGCTGATGTATATAGTTTTGGAATGCTTTTGATGGAAATGGCGGGCAGGAGGAAGAACTTGAATCCTCATGCAGAGCATTCAAGTCAACTTTACTTTCCCTTTTGGATTTACGACCAATTCAATGAAGAGAAAGACGTGGAAATGGAAGATTTGACAAAAGAGGAAAAGGATTTAACAAAGAAGATGTTCGTAGTAGCTCTATGGTGCATACAATTGAAGCCAAGTGATCGTCCTTCAATGAACAAAGTAGTACAGATGTTAGAAGCAGAATTTGAAAGCCTTGAAATGCCTCCAAAGCCTTCTCTGTATCCTCATGAAACCGTTGCAGGGGATCAAGGATTCAGCTCTGATCAAATGGAGACAAGTGGATCCACTAGTTCTACCAATTATATTGTGGAAAATGTAACTGATCATTCGGACCAATTCGATGAAGAAAAAGATATAGAAATGGAAGATGTTACAGTGGAGGAAAAGACCATAGCCAAAAAAATGTTCATAGTTGCACTGTGGTGTATACAGTTGAAGCCTTGTGATCATCCTTCAATGAACAAGGTAGCAGAGATGCTTGAAGAGGAAACAGAAAACCTTGAAATGCCTCCAAAGCCAACTATATATTTATGCAACTGA 2262 0.4103 MLTITCVWGGGRSSGVVLVFIMIVLRLRQSWGGCVSSCGKMGNISYPFRLKDDPHNCGEKRYELECINQVVVLRLFSGEYYVESINYTDYTIRLVDPNIQHSDCSSLPRYLLSIFNFSDNEYDAYRATQIRDYSTEQLFRHIIYLDCPTPVRSDEYPYNYVNTCDCLDDPNIYAIEIEDNYFPVRSLKNGCHVKLVAPISKPKSTYYGYTASYRAIHSELLYGFELSWLHASCDFHCGFRPCFFNTATQSIQCHSADHGYRSLEYCQVYSFDDLPVLGLLAAITLGKIGRIPNLRQEIIGRYVLAPFLFVRLLLGVTLVISLLLFKWRRRHLSMYENIEHFLQHSNLNPIRYSYREIKKMTNGFKVKLGEGDFGSVYKGKLRSGPYVAIKMLSKSKANGQDFISEVATIGRIHHVNVVRLVGFCVEGTKRALVYEFMPNGSLDKFIFSREGSIPLSYQKIYEISLGVARGISYLHQGCDMQILHFDIKPHNILLDDNFIPKVSDFGLARLYPVDHSIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGRRKNLNPHAEHSSQLYFPFWIYDQFNEEKDVEMEDLTKEEKDLTKKMFVVALWCIQLKPSDRPSMNKVVQMLEAEFESLEMPPKPSLYPHETVAGDQGFSSDQMETSGSTSSTNYIVENVTDHSDQFDEEKDIEMEDVTVEEKTIAKKMFIVALWCIQLKPCDHPSMNKVAEMLEEETENLEMPPKPTIYLCN 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1311 753 Gene3D Transferase(Phosphotransferase) domain 1 437 641 - -
Glsi10g1311 753 CDD STKc_IRAK 368 633 - -
Glsi10g1311 753 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524
Glsi10g1311 753 FunFam serine/threonine-protein kinase PBS1-like 332 436 - -
Glsi10g1311 753 SMART serkin_6 362 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1311 753 Coils Coil 582 606 - -
Glsi10g1311 753 ProSiteProfiles Protein kinase domain profile. 362 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1311 753 Pfam Wall-associated receptor kinase galacturonan-binding 34 96 IPR025287 GO:0030247
Glsi10g1311 753 MobiDBLite consensus disorder prediction 651 673 - -
Glsi10g1311 753 Gene3D Phosphorylase Kinase; domain 1 336 436 - -
Glsi10g1311 753 SUPERFAMILY Protein kinase-like (PK-like) 346 633 IPR011009 -
Glsi10g1311 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Glsi10g1311 753 MobiDBLite consensus disorder prediction 656 673 - -
Glsi10g1311 753 FunFam PR5-like receptor kinase 437 644 - -
Glsi10g1311 753 Pfam Protein kinase domain 366 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1311 753 PANTHER RUST RESISTANCE KINASE LR10-RELATED 669 747 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1311 Glsi-ChrGlsi10 8887068 8889957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1311 665 750 Receptor kinase-like Gene Family AT5G38260 41.111 4.45e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Glsi10g1311 Pkinase 2.5e-47 CL0016