Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1310 ATGATGGTATTGCTGGTGCTGATGAATCTTGGGAACGGTGGGAACGAGTGCAGGGACATGTATTCTCGCCCTAATAACTGTGGGTCTATTCAAATTCGATTCCCATTCCTACTCGTCGACGGCATGACTAATCACTGTGGCTTTCCTGGCTTTCGTCTATGTTGCATAAATAACAATGTGACCATGCTTGAGCTCCCTGAAATTCCTGATCCAATAAGGCTCTTCGTCAATTACATAGACTATGAATCGCAGCTGTTATGGATATCTGACCCCGAATCCTGTCTTCCGAGACTTTTTTTAAAACTCTTCCATTCATCATCAATTGATCCTTTCGAATTTTATTCATATTCGGATTCCGAAACACCCAACAATGTTACTTTCTTTGATTGTTCTTCAATGGGGTCGAGACGCTGCCCCACTTTTGCTGCTGACTCCGACGATAGTGTCGATCGGGTGGGGGCGGACCTTGTTTCCTGCTCCAAAAAGTCTGAGATAGTTTCACCAGTATCCGCAACAGACCTTCAGACAGACAACTACTTAATACTCGAATGGTCCAAACCAAATTGTGATGTCGAAAATTTTTATTGCAACCATAAACCCTCCAAGATATCTACAATTATTTTGCCTGTTACAGGTTCAATTGGGTTGCTGCTATTGCTCCTTGCGCTCTTTCAAATCTATAGATATTTTAGAATGAAAGGAGAAGATCAGGCAAGAGTCGAAAAATTCTTGAAGGATTACAAGGCACTCAACCCTACAAGATTCTCTTATGCTGATCTTAAGCGAATGACAGACAATTTTAAGGATAAGTTAGGTGAAGGAGCTCACGGAACAATCTTTAAAGGTAAGGTGTCAAGTGAGATTGTAGTGGCTGTAAAGATGCTGAATAATTCGGAGGGGGATGGCAAAGACTTCATAAATGAAGTGGGGACTATGGGAAAAATCCACCACATCAATGTGGTTCGGTTGTTGGACTTTTGTGCTGACGGATTTTGCCGTGCTCTTGTTTATGCTTTCTTTCCAAACGGTTCCCTACACAACTTCATATCTACTGCGGACAACAAGGACAGCTTCCTTGGATGGGAAAAGCTACAACAAATAGCTATTGGCATGGCCAAAGGGATTGAATATCTTCATCACGATTGTGATCATCGAATACTGCACTTTGACATTAATCCTAATAATGTGTTACTCGATCACAATTTCACTCCAAAAATTTCTGATTTTGGTCTAACCAAATTGTGTTCTAAGAATCGAAGTACAGTGTCAATGACTGCAGCCAGAGGAACTTTAGGCTACATTGCACCCGAAATTTTCTTCAAAAATTTTGGAAATGTGTCATATAAGTCAGATATTTATAGTAATGGAATGTTACTGATAGAAATGGTTGGAGGAAGGAAAAATGCAAGCGCAGGTCAAGAAGGTTTTGAAATTCTATACCCCGAATGGATTCATAATTTGGTCGAAGGAAGAGACATACATATTCATATAGAAGATGAAGATATTAGAATTGCAAAGAAATTAGCAATTGTGGGACTTTGGTGCATTCAGTGGCAGCCGATGAATCGGCCATCCATGAAAACTGTGGTGCAAATGCTAGAAGGAGAAGGAGACAACTTGAAGGTGCCCCCTGTTCCCTTTGACTCCACCACTTCTACTAGTACGAGTACAGTTATTCCTACAAGACGACTGAATTTGGAGTTGGAAGTAATTTATGAATTGGAATGA 1728 0.4068 MMVLLVLMNLGNGGNECRDMYSRPNNCGSIQIRFPFLLVDGMTNHCGFPGFRLCCINNNVTMLELPEIPDPIRLFVNYIDYESQLLWISDPESCLPRLFLKLFHSSSIDPFEFYSYSDSETPNNVTFFDCSSMGSRRCPTFAADSDDSVDRVGADLVSCSKKSEIVSPVSATDLQTDNYLILEWSKPNCDVENFYCNHKPSKISTIILPVTGSIGLLLLLLALFQIYRYFRMKGEDQARVEKFLKDYKALNPTRFSYADLKRMTDNFKDKLGEGAHGTIFKGKVSSEIVVAVKMLNNSEGDGKDFINEVGTMGKIHHINVVRLLDFCADGFCRALVYAFFPNGSLHNFISTADNKDSFLGWEKLQQIAIGMAKGIEYLHHDCDHRILHFDINPNNVLLDHNFTPKISDFGLTKLCSKNRSTVSMTAARGTLGYIAPEIFFKNFGNVSYKSDIYSNGMLLIEMVGGRKNASAGQEGFEILYPEWIHNLVEGRDIHIHIEDEDIRIAKKLAIVGLWCIQWQPMNRPSMKTVVQMLEGEGDNLKVPPVPFDSTTSTSTSTVIPTRRLNLELEVIYELE 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1310 575 PANTHER RUST RESISTANCE KINASE LR10-RELATED 237 551 IPR045874 GO:0004672
Glsi10g1310 575 FunFam serine/threonine-protein kinase PBS1-like 233 339 - -
Glsi10g1310 575 ProSiteProfiles Protein kinase domain profile. 265 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1310 575 Pfam Wall-associated receptor kinase galacturonan-binding 25 90 IPR025287 GO:0030247
Glsi10g1310 575 Gene3D Phosphorylase Kinase; domain 1 238 339 - -
Glsi10g1310 575 SUPERFAMILY Protein kinase-like (PK-like) 248 534 IPR011009 -
Glsi10g1310 575 Gene3D Transferase(Phosphotransferase) domain 1 340 542 - -
Glsi10g1310 575 FunFam PR5-like receptor kinase 340 544 - -
Glsi10g1310 575 Pfam Protein kinase domain 268 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1310 575 ProSitePatterns Protein kinases ATP-binding region signature. 271 293 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1310 Glsi-ChrGlsi10 8875916 8877815 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1310 231 555 Receptor kinase-like Gene Family AT1G66910 45.646 2.82e-99 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Glsi10g1310 Pkinase 7e-41 CL0016