Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1309 ATGCAGGAAGTGAGTTGTGGGGGAAAGCATGAGGAGGAGGAAGCATGTGCCGCTTCTTGGTGCGGCAATATCACCAACATAAGTCATCCTTTTCGACTAAGAGATGACCCAGCAAACTGTGGTGACCGGAGCTACGAGTTGGCTTGTGAAAATAATGTCACTGTGCTTCATTTGAATTCGACGAAATACAATGTGCTGGGAATCAACTACAGTGACTATACAATCAGACTCCTCGATCCTGGCATTCAACTGGATAATTGCTCCTCCCTCCCTCGCTATTTCTTTTCTCTTTCTAATTTCAGTCGTTTTTACACTGCTGTGGCCTCGTATGATTATTATCGGTACCCAACAGTAGAAGATGTATTATTCGAGAACCTCATTTACTTGAACTGTAGCGATCCAGTGAGGGATGAGCCTATGTACGTGGAAACGACTCCCTGCGTCAATTGGCACTCCGAAGGCCATATTTACGCTGTCCTTGGAGACTTACTGGTTCGGAATTTAAAAGATCAGTGTCTCCTCAAATCAATCGCACTTATCACATCGGCTCGGGGTTCCTTCCTACACAATAACAACTTCTCCTACGCTGATATTCACAGGGTGCTAACGTATGGATTTGAGCTTTCCTGGTGGCGTCGAGCTTGTGAGGACCTTCATTGTGAATTTGATTCATGCCATCTCGACCCTGCCACTTCAAAACTAGCATGCGATAAGAATTCGCTAGACTGTGAACTGTGTGGTGTGTCAAAGCTGCGCATATTTGCAGAAGATTATCTCTTTGGAATTCTTAAAGGACTACTCCAAATAGTAGGGCAGGATGCAGCTCCTTCCAATCTTGGTCTAACGCATCTCGGCTTGGACTTGGGAGTATTTACTGGAAGATTCCTTCTGCCGTACCTTATTGCTAAATTTCTATTTGGTATCATATTTTTGTCTGTGCTGTTGATTTATACATGCCGAAGAAGACACTTGTCCATGTATGAAAATATTGAAAGTTTTCTACAAGATAATGATCTCACGCCAATAAGGTACTCCTACAAACAAATTAAGAACATGACCAGAGGTTTCAAGAACAAGTTGGGTGAAGGAGGCTTCGGCACTGTATATGAAGGGAAGCTACGTAGTGGGCCTCATGTGGCTGTCAAAATGTTGGGTAAATCCAAAGCCAACGGCCAAGAATTCATCAGTGAAGTGGCAACCATTGGAAGGATACACCATGTCCACGTGGTTCGGCTTATTGGATTTTGCGTGGAGGGATCAAAGCGTGCTCTCGTCTATGAATTCATGCCCAATGGCTCTCTTGACAAATTCATTTTCTCCAAAGAGGGAAGTGTCCCCTTAAGTTATGACAAAATATATGAGATATCTCTGGGAGTGGCTCGTGGGATTGCTTATCTTCATCATGGCTGTGACATGCAAATTCTGCATTTTGATATCAAGCCCCATAACATTCTTCTTGACGATAACTTCATCCCAAAGGTTTCAGATTTTGGACTCGCAAGATTATACCCGGTTGATGATAGCATTGTGACTTTGACTGCTGCAAGAGGAACAATAGGGTACATGGCTCCTGAATTGTTCTACAAAAATATAGGGGGAGTGTCCTATAAGGCTGATGTATATAGTTTTGGAATGCTTTTGATGGAATTGGCGGGCAGGAGGAAGAACTTGAATCCACATGCAGAGCATTCAAGCCAACTTTACTTTCCCTTCTGGATTTACGACCAATTCAATGAAGAGAAAGACATAGAGATGGAAGATTTGACAAAAGAGGAAAAGGATTTAGCAAAGAAGCTGTTCGTAGTAGCGCTATGGTGCATACAATTGAAGCCAAGTGATCGTCCTTCAATGAACAAAGTAGTACAGATGTTAGAAGCAGAATTTGAAAGCCTTGAAATGCCTCCGAAGCCTTCTCTGTATCCTCATGAAACGGTTGCAGAGGATCAAGTATTCAGCTCTGATCAAATGGAGACGAGTGAATCCACTAGTTCTACCAGTTATATTGTGGAAAATGTAACTGATCATTCGGTACAGAACAATGCTTGA 2046 0.4286 MQEVSCGGKHEEEEACAASWCGNITNISHPFRLRDDPANCGDRSYELACENNVTVLHLNSTKYNVLGINYSDYTIRLLDPGIQLDNCSSLPRYFFSLSNFSRFYTAVASYDYYRYPTVEDVLFENLIYLNCSDPVRDEPMYVETTPCVNWHSEGHIYAVLGDLLVRNLKDQCLLKSIALITSARGSFLHNNNFSYADIHRVLTYGFELSWWRRACEDLHCEFDSCHLDPATSKLACDKNSLDCELCGVSKLRIFAEDYLFGILKGLLQIVGQDAAPSNLGLTHLGLDLGVFTGRFLLPYLIAKFLFGIIFLSVLLIYTCRRRHLSMYENIESFLQDNDLTPIRYSYKQIKNMTRGFKNKLGEGGFGTVYEGKLRSGPHVAVKMLGKSKANGQEFISEVATIGRIHHVHVVRLIGFCVEGSKRALVYEFMPNGSLDKFIFSKEGSVPLSYDKIYEISLGVARGIAYLHHGCDMQILHFDIKPHNILLDDNFIPKVSDFGLARLYPVDDSIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMELAGRRKNLNPHAEHSSQLYFPFWIYDQFNEEKDIEMEDLTKEEKDLAKKLFVVALWCIQLKPSDRPSMNKVVQMLEAEFESLEMPPKPSLYPHETVAEDQVFSSDQMETSESTSSTSYIVENVTDHSVQNNA 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1309 681 PANTHER RUST RESISTANCE KINASE LR10-RELATED 327 650 IPR045874 GO:0004672
Glsi10g1309 681 Gene3D Transferase(Phosphotransferase) domain 1 429 633 - -
Glsi10g1309 681 FunFam serine/threonine-protein kinase PBS1-like 324 428 - -
Glsi10g1309 681 Pfam Wall-associated receptor kinase galacturonan-binding 16 79 IPR025287 GO:0030247
Glsi10g1309 681 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Glsi10g1309 681 SMART serkin_6 354 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1309 681 ProSiteProfiles Protein kinase domain profile. 354 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1309 681 CDD STKc_IRAK 360 625 - -
Glsi10g1309 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Glsi10g1309 681 SUPERFAMILY Protein kinase-like (PK-like) 340 625 IPR011009 -
Glsi10g1309 681 Gene3D Phosphorylase Kinase; domain 1 331 428 - -
Glsi10g1309 681 Coils Coil 574 598 - -
Glsi10g1309 681 FunFam PR5-like receptor kinase 429 636 - -
Glsi10g1309 681 MobiDBLite consensus disorder prediction 647 681 - -
Glsi10g1309 681 Pfam Protein tyrosine and serine/threonine kinase 356 624 IPR001245 GO:0004672|GO:0006468
Glsi10g1309 681 MobiDBLite consensus disorder prediction 648 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1309 Glsi-ChrGlsi10 8871752 8875467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1309 11 655 Receptor kinase-like Gene Family AT5G38260 34.842 1.45e-111 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Glsi10g1309 PK_Tyr_Ser-Thr 5.6e-47 CL0016