Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1307 ATGGATCGAGTTTCTTCCTCTGTCATGGATACTGCATGTGCAACACGAGCACAACAATTTGTTCTACGAAGTTTTTCGCAGCCAGTTCCAGTCAAGCTTGACAAAGAGAACTTCCTCACATGGAAACAAGTCTCAACCACAATTCATGGTTACAAGCTCCAGAAGTATCTTCTTGGTGCTCATGTTGTTCCACCTGAATTCAATTCTGCGAACTTTTATTTTTTGCGCTTTATGTCAGCCGCTGCCGCCCTTCCTCCTTCCTCACCTTTGATTTTACATGCACACACCATGAAGAAGCTAAATTGTCACCCCCAAATGGCCGCCGATTCCAAAGCGTTGTGCCATCACACTCTCTTGAAATTCAAGAATGCTCGCCAGCGAAGACTCAAAATCCGACGATTGAAGTATACTTGTGAAGCCAAAGTCCGCGTCGACTTCGCCGACGGGGATTGCGGGAGCCCCTCCCTTGGTCGGAGGGAGGACGGGAAGCGTATCGAGTCGGATAATAAAAATAGAGATATTCATGAGTCGATGGAGATATCGTTATCGTTAACGACGTCGCCTGAGAAGAAGGATCGCTCGTTGGCGCCTAACGACGCTGTTTTGGCGGCTTTCGGAGGGGAGGAATGCAAAGAAAATGGCGATCTGAAGCAGTTACCTTACGGTTCGGTATCCGTGATAGGTAGTAGGAAAGAGATGGAAGATGCGGTGAGCATAGAAATGGAGTTCGTGGTGAGGGAAAGAGTGAAGTGTGACTACTTTGCGGTTTATGACGGGCACGGTGGGCCTCAGGTGGCAAAAGCGTGCCGGGAGCGACTGCACCAATTGGTGGCGGAAGAGCTGGAAAGGCATGGCCGAAGTGGTAATAAAGTGGATTGGGAGGGAATGATGGAAGCGTGTTTTGGTAAAATGGACAGAGAGGTGGCAGATGATGCGGCGGTAAGGACTGTGGGTTCTACGGCGGTTGTGGCGATGGTAGCAAAGGAGGAGGTGGTTGTGGCGAATTGCGGTGACTGTAGGGCGGTGATGGGAAGAGGAGGTGAGGCCTTCGACTTGTCTAATGATCACAAGCCTGACAGGCCTGATGAGTTGATTCGAATCGAAGCCGCTGGTGGAAGGGTCATAAACTGGAATGGCCAACGCGTTCTAGGAGTTCTTGCTACCTCGAGATCTATAGGAGACCAATACCTTCGACCTTATGTAATATCGAAACCAGAAGTGACTGTGACGAAGCGAAGTAACGAGGATGAATTTCTGATACTAGCCAGTGATGGCTTGTGGGATGTCATGTCCAGTGAAGTTGCGTGCCAGGTTGTAAGGAAATGTCTGAGTGGCCAAATGAAACGATTTTCCCCGGAGGTTGGGAATCAAAGCCGTGCTGCCGAGGCTGCTGCCCTGTTAGCTGAACTAGCCATGGCAAAGGGGAGCAGAGATAACACGAGTGTCATAGTAGTTGATCTGAGGAAGCATAACATCTAG 1479 0.497 MDRVSSSVMDTACATRAQQFVLRSFSQPVPVKLDKENFLTWKQVSTTIHGYKLQKYLLGAHVVPPEFNSANFYFLRFMSAAAALPPSSPLILHAHTMKKLNCHPQMAADSKALCHHTLLKFKNARQRRLKIRRLKYTCEAKVRVDFADGDCGSPSLGRREDGKRIESDNKNRDIHESMEISLSLTTSPEKKDRSLAPNDAVLAAFGGEECKENGDLKQLPYGSVSVIGSRKEMEDAVSIEMEFVVRERVKCDYFAVYDGHGGPQVAKACRERLHQLVAEELERHGRSGNKVDWEGMMEACFGKMDREVADDAAVRTVGSTAVVAMVAKEEVVVANCGDCRAVMGRGGEAFDLSNDHKPDRPDELIRIEAAGGRVINWNGQRVLGVLATSRSIGDQYLRPYVISKPEVTVTKRSNEDEFLILASDGLWDVMSSEVACQVVRKCLSGQMKRFSPEVGNQSRAAEAAALLAELAMAKGSRDNTSVIVVDLRKHNI 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1307 492 ProSitePatterns PPM-type phosphatase domain signature. 253 261 IPR000222 GO:0043169
Glsi10g1307 492 ProSiteProfiles PPM-type phosphatase domain profile. 220 487 IPR001932 -
Glsi10g1307 492 PANTHER PROTEIN PHOSPHATASE 178 487 IPR015655 GO:0004722|GO:0006470
Glsi10g1307 492 CDD PP2Cc 221 487 IPR001932 -
Glsi10g1307 492 SUPERFAMILY PP2C-like 216 488 IPR036457 -
Glsi10g1307 492 SMART PP2C_4 210 485 IPR001932 -
Glsi10g1307 492 Gene3D - 217 491 IPR036457 -
Glsi10g1307 492 FunFam Protein phosphatase 2C 51 214 492 - -
Glsi10g1307 492 Pfam Protein phosphatase 2C 222 480 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1307 Glsi-ChrGlsi10 8862145 8868233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1307 221 489 PP2C-type Phosphatase Gene Family AT1G07430 47.962 1.80e-87 273