Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1301 ATGATGGATTGCAACAAAGATGAGGCATTTAGGGCCAAAACGATAGCAGAGAAGAAATTTTCAGATAGGGAATATGCTGGTGCAAAGAAGTTTGCTCTCAAGGCTCTAAATTTGTATCCTGCTCTAGAAGGTCTTTCACAGTTTTTGACAACTCTTGATGTTTATATCTCCGCTGAGAATAAAGTAAGTGGAGAAATGGATTGGTATGGTATACTTGGGGCGAAACCCTTTGACGATGACGAGACAGTTAGAAAACAGTATAGGAAGCTGGCTCTCACTCTTCACCCAGATAAAAACAAGTCTTTAGGTGCAGAGGGTGCATTCAAGCTGGTTTCAGAGGCATGGAGTTTGTTGTCAGATAAAACCAAGAGACTAGAATATAACCAAAAGAGGAGTTTGAAAGGTTTTCATCGTAGAACACCCAACCATGTCGGGTCTCAATCAGAAGTACCCACTTCGAATGGTTTTTATAATTTTAACAAAAATGTAACTTCAAATATGAGGACTGGAAATAGTAATGCTCAAGCACACCATGCCTCAGTTCCTCATCCACAGAAAAAGGCTGACACCTTTTGGACTATTTGTAATCGGTGCAAGACTCATTATGAATATCTCAGGATTTACTTGAATCATACACTTCTATGTCCCAATTGTAATGAGGCTTTCTTGGCCATAGAGAAGGATCCGCCTCCCAATTATTTTAAGTCAACAAATTGGTCTTCTCGCCAACAGCATCAGAGTTCTCGGCATCGTGCTGCAAGTAATAACCCAGTTAAGCCAGGAAGAAATTGTGCAGTTTCTCAACATTCAGAAGCTGGTGGATCTTCAGGCATGTCATCGTTTAGTGAAACAAGTTTTCAGTGGGGTCCTCACTCTAGCATGGCTGGTTTTGGTAGCACAGATGGATCATCGTCTGTTGCTGCTCAAGCTGCAAGGGTTGTGCAGCAGGCAAGTGAGAAAGTGAGAAGCGAATGTGAGGGAGCACCATCAATTGCCGAAGGAGAGAGGAGTCAAATGTCTAAGAGGACTGATGGTTCTTTTCATAAAGTGGAGAAACCTTTGAAGAAGAGGAGGACAGATGATACTTGCATGAATGGTTTTAAAGGATACATGGCAAGTCATGTGGCCATGGGACATGGTGCAGCTGGTTTGGGATGTGTTTCTGATTCCAAAAAAGCTAATTTGGAAACAGAAAGAAGCTATGGTTTTTCAGGTATTAAGCCTTACAGTATGAGAGAGTTGTCAATATTTGAACTACGGAACATGTTGGTGGATAAGGCACGGATTGAAATAAAAAAGAAGCTTGAAGAATGGAGATCAATAGCTGAAGCAAAGATCACGAACAAGAGCAAAGAGAACAAGAGACAAAAAAGCACATTGAACCAAAAAATACCTAATCTAAAGAAGCATGGGGGGTCCACTTTTGATAATAACTGGCGTCAGGATGATGATTCTTTTACTGTCACATCTGACGATACAGTTAAGAAGGACCAATCTTACATTACAATCAATGTTCCAGACTCTGATTTCCACAATTTTGACTTGGATAGAGCTGAAACTTCTTTTGGTGAGGACCAGGTATGGGCTGCTTATGATGATGATGATGGAATGCCTCGATATTATGCTCGAATTCACAAGGTGATATCAATGAAGCCTTTTAGAATGCGAATCAGTTGGCTTAACTCAAGAAGCAACAGTGAATTGGGTCCAATAGATTGGATAGGTGCTGGTTTTTATAAAACTTGTGGGGATTTCAGGACGGGCAAGCATGAAATAACTGAATCATTAAATTCATTTTCACACAAAGTGAGGTGGACAAAAGGCACTAGAGGAGTTGTTCGCATCTTTCCTAGAAAGGAGGAAGTCTGGGCTCTTTATAGAAACTGGTCTCCTGAGTGGAACGAACACACTCCTGATGAAGTGATACACAAGTATGATATGGTGGAGGTACTTGAAGATTTTAATGAGGAGCAAGGTGTAGTAGTTATCCCACTGATTAAGCTTACTGATTTCAGGACCGTCTTCCGTAGGGACATGGACCCTGATCAGGTGAGGAAGATTCCTAAAGAGGAGATGTTTCGCTTCTCACATCAGGTACCTAATTACTTGCTTACAGGCCAAGAAGCTCAAAATGCTCCTAAAGGTTGTCGAGAGTTGGATCCAGCAGCCACACCTTTAGACTTCCTTCAGATAACGACAGAAGCTAGTGAGGGATCAGATAAAGTTAAGGAAGACACATTGCTCAAGTCACCTGAAATTCGTGCGGCTGGGATGGGGGAGAATGCTTCAAAAACAAGAAGAGAACTGGTAGACAAGGATGTTAAGTAG 2328 0.4154 MMDCNKDEAFRAKTIAEKKFSDREYAGAKKFALKALNLYPALEGLSQFLTTLDVYISAENKVSGEMDWYGILGAKPFDDDETVRKQYRKLALTLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSLKGFHRRTPNHVGSQSEVPTSNGFYNFNKNVTSNMRTGNSNAQAHHASVPHPQKKADTFWTICNRCKTHYEYLRIYLNHTLLCPNCNEAFLAIEKDPPPNYFKSTNWSSRQQHQSSRHRAASNNPVKPGRNCAVSQHSEAGGSSGMSSFSETSFQWGPHSSMAGFGSTDGSSSVAAQAARVVQQASEKVRSECEGAPSIAEGERSQMSKRTDGSFHKVEKPLKKRRTDDTCMNGFKGYMASHVAMGHGAAGLGCVSDSKKANLETERSYGFSGIKPYSMRELSIFELRNMLVDKARIEIKKKLEEWRSIAEAKITNKSKENKRQKSTLNQKIPNLKKHGGSTFDNNWRQDDDSFTVTSDDTVKKDQSYITINVPDSDFHNFDLDRAETSFGEDQVWAAYDDDDGMPRYYARIHKVISMKPFRMRISWLNSRSNSELGPIDWIGAGFYKTCGDFRTGKHEITESLNSFSHKVRWTKGTRGVVRIFPRKEEVWALYRNWSPEWNEHTPDEVIHKYDMVEVLEDFNEEQGVVVIPLIKLTDFRTVFRRDMDPDQVRKIPKEEMFRFSHQVPNYLLTGQEAQNAPKGCRELDPAATPLDFLQITTEASEGSDKVKEDTLLKSPEIRAAGMGENASKTRRELVDKDVK 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1301 775 Gene3D DnaJ domain 64 178 IPR036869 -
Glsi10g1301 775 PRINTS DnaJ domain signature 103 123 IPR001623 -
Glsi10g1301 775 PRINTS DnaJ domain signature 69 87 IPR001623 -
Glsi10g1301 775 PRINTS DnaJ domain signature 87 102 IPR001623 -
Glsi10g1301 775 Pfam DnaJ domain 67 128 IPR001623 -
Glsi10g1301 775 MobiDBLite consensus disorder prediction 734 775 - -
Glsi10g1301 775 SUPERFAMILY Chaperone J-domain 59 127 IPR036869 -
Glsi10g1301 775 MobiDBLite consensus disorder prediction 320 346 - -
Glsi10g1301 775 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Glsi10g1301 775 PANTHER BNAC03G44070D PROTEIN 2 725 - -
Glsi10g1301 775 CDD DnaJ 67 120 IPR001623 -
Glsi10g1301 775 MobiDBLite consensus disorder prediction 234 284 - -
Glsi10g1301 775 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Glsi10g1301 775 Pfam Domain of unknown function (DUF3444) 502 708 IPR024593 -
Glsi10g1301 775 SMART dnaj_3 66 123 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1301 Glsi-ChrGlsi10 8817573 8819900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1301 5 230 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.333 2.14e-30 121