Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1300 ATGGGATTCCAATCATCTCATGCTAGTAAACCGAAAGTGCAACCTGTTTTGAAAGTAAGGGACGACGCAAGTGATGGTCTTGAAGGGACATTGATTCTTAGAGCACTAAACTTGAGCGGTCATAGTGTTACCAAATCTATTCCCTCAACCTACGATTCATGGGTGGCTAGACACCCTTCTGCGTTGCGCTCATTTGATAGATTAATGAAAGCGGCCACTGGGAAGGATATGGTGGTGTTTTTAGACTACGACGGTACATTATCACCCATTGTAGACGACCCTGATCGTGCTTTTATGTCTGACGAGATGCGTGCAGCAGTATGTGAAGTTGCTAAACATTTCCCAACAGCGATAATTAGTGGAAGAAGCAGAGACAAGGTGAAAGAATTTGTCAAGTTAAGTAATGTATATTATGCTGGAAGCCATGGCATGGACATAAGGGCACCATCAATGCCACTTAAATCTTCTGATGGCAAGCTCAATAACTTGGACCTTGACGCAAAGGCCAATGGAGTTCCCTTCCAACCTGCAAAGAAGTTTTTGCCTGCAATTCGAGAGATATTGAAAATATTAGAGAATAAAACGAGAGACATACAAGGTGCAAGGGTAGAGGACAATGGATTCTGCGTCTCTGTCCATTTCCGGCAGGTCCAAAAAGAGGATTATGGCGTATTAGAAGAGATGGTGAAGTCTGTGCTTGAAAATCATCCAGATTTTTGCTTAACTGAGGGTAAAAAGGTGATGGAAATAAGGCCAAGCATAGAATGGAATAAAGGTCATGCCCTAGAATATTTTCTTGACACACTAGGGTTAGGAAGTTCCAACAATATCCTTCCCGTGTATATCGGTGACGATCGAACTGATGAAGATGCTTTTAAGGTGATACAGGGCAGAGGACAAGGTTATCCAATTATAGTGACTTCTATGCCGAGGGACACAAAAGCTTTGTACTCCTTGCGAGATCCGTCGGAAGTATTAATTTTCTTGTCACGGCTGGCAAAATGGAGGAAAACCAGTTGCTGA 1023 0.4282 MGFQSSHASKPKVQPVLKVRDDASDGLEGTLILRALNLSGHSVTKSIPSTYDSWVARHPSALRSFDRLMKAATGKDMVVFLDYDGTLSPIVDDPDRAFMSDEMRAAVCEVAKHFPTAIISGRSRDKVKEFVKLSNVYYAGSHGMDIRAPSMPLKSSDGKLNNLDLDAKANGVPFQPAKKFLPAIREILKILENKTRDIQGARVEDNGFCVSVHFRQVQKEDYGVLEEMVKSVLENHPDFCLTEGKKVMEIRPSIEWNKGHALEYFLDTLGLGSSNNILPVYIGDDRTDEDAFKVIQGRGQGYPIIVTSMPRDTKALYSLRDPSEVLIFLSRLAKWRKTSC 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1300 340 Gene3D - 77 158 IPR023214 -
Glsi10g1300 340 Gene3D - 172 340 IPR023214 -
Glsi10g1300 340 NCBIfam trehalose-phosphatase 75 334 IPR003337 GO:0003824|GO:0005992
Glsi10g1300 340 NCBIfam HAD-IIB family hydrolase 79 297 IPR006379 -
Glsi10g1300 340 SUPERFAMILY HAD-like 78 336 IPR036412 -
Glsi10g1300 340 FunFam Trehalose 6-phosphate phosphatase 182 340 - -
Glsi10g1300 340 CDD HAD_TPP 78 325 - -
Glsi10g1300 340 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 34 339 IPR044651 GO:0004805|GO:0005992
Glsi10g1300 340 Pfam Trehalose-phosphatase 80 323 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1300 Glsi-ChrGlsi10 8800198 8802133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1300 74 339 Trehalose Biosynthesis Gene Families AT1G06410 23.675 6.32e-08 52.4