Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1292 ATGTTTGAAACATTCTCGCGGCTTACGTGTGGGCCTAATTTAAACGAGCAAAACGGCAAGCAAGCTCTGATGGCTTACTTGTCACTATCACCAAAAGAGAGAGCTAATTCAAATTTCTGGTTCTGTATGGAGGCCGGCAAACCAACAATAAATAGCATTCAAAACTATTATGCTGGAATTATGCTGGAAGCTGCCATTGTTGGTATTGAAGCTCAGAACTCAGCCTTGGGAACTGAACTGCTTTTCCATTTTGTACATCCCAAAACTGTTTGCCCTGAACTGGTTGGTTCAACATCAAACCAGCAAAACCAGACTGGTTCAGCACTGCCTTCCTCAATATCCTTTCCCGGAAACCCCAAAAAGCTTGAAATGGACGACAGCTTATCTGATATTTTCGAAGACAACACCCACTTGGGTGGAGGCGATCTCCTTGCCATATTGGAGAGCCTAGAGGACTTCACTGATTTTCCACCCATTCATGAAGCCGTTGTTATCAGCTCAAAAGAGAACCAGGAAACTTCAAGATTAGTATCCCAGAAGTCAACTTCTTCCAGCGCTCTTCAAGATTCTGAAACTGAGCTTGAAACTTCACCCAAAAGCAAGAGACAAAAGCTTGCGGGGACGGCTTCGTCAGAGGAACCAATCCCAGATGGGCAACAAAAGATATCTCATATTACTGTGGAGCGCAACCGAAGAAAGCAAATGAATGAGCATTTGTCCGTCTTGAGGTCTCTTATGCCTTGCTTTTATGTCAAACGAGGAGATCAAGCATCAATAATTGGAGGGGTAGTTGATTACATCAATGAGTTGCAGCAGCTTCTACAATCCTTGGAGGCAAAGAAACAAAGAAAAGTTTATACTGAAGTTCTAAGCCCTAGGCTAGTTTCAAGTCCAAGGCCTTCACCCCTTAGTCCTAGAAAGCCCCCGCTGAGCCCTAGACTCAACTTACCCATTAGTCCAAGGACTCCTCAACCAGGTAGCCCTTACAAGCCCATACTGCATCAACCTGGTTACCTGTCACCTTCAATATCCAACTCTCTTGAGCCATCCCCTACATCTTCTGCTTCCTCCATTAACGATAATATAAATGAGCTTGTGGCCAATTCCAAGTCTGCTATCGCGGATGTGGAGGTAAAGTTTTCCGGTCCCCACGTTCTTTTGAAAACTGTGTCTCCTCGAATTCCTGGGCAAGCTCTGAAAATCATATCAGCTCTTGACGACCTAGCGCTTGAAATTCTCCATGTCAGCATTAGCACCACTGCTGACGAAAACATGGTCAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCCGAGGAACTGGCTCAACAAGTCCAGCAAACATTCTGCCAAGACCTGGAACAAGATGGCGTAGCTTGGGCTTTTGAGAACCACGGGATGTACACTGTGAGGAGTGCTTACAGTTATCTCTCTAAAGAACCGTGGAGAAGTGAGAAAACCTTAGGCTGGCTATTTGGAAATGGCAAGCTCAGAGAGGATTCGGATGTTCCTATGGCTGGTTATGAAGGGGAGACTTCTAACGAACGACTATCTTCCCCGAGGCAGACCTGGGATGGAGTGCTTGATACCTCGGCCAAAGTTAATGTTTTCGCCTGGGGATTGGAAGAGTGGAGCCTGATGAATTTACGAACTTGTCTGGGCAATTTTGTCGAGCATGACTGGAAAGTGGTTTTGGGGGTTACGACTTGGCTTTGGTGGAAATAG 1734 0.455 MFETFSRLTCGPNLNEQNGKQALMAYLSLSPKERANSNFWFCMEAGKPTINSIQNYYAGIMLEAAIVGIEAQNSALGTELLFHFVHPKTVCPELVGSTSNQQNQTGSALPSSISFPGNPKKLEMDDSLSDIFEDNTHLGGGDLLAILESLEDFTDFPPIHEAVVISSKENQETSRLVSQKSTSSSALQDSETELETSPKSKRQKLAGTASSEEPIPDGQQKISHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQLLQSLEAKKQRKVYTEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYKPILHQPGYLSPSISNSLEPSPTSSASSINDNINELVANSKSAIADVEVKFSGPHVLLKTVSPRIPGQALKIISALDDLALEILHVSISTTADENMVNSFTIKIGIECQLSAEELAQQVQQTFCQDLEQDGVAWAFENHGMYTVRSAYSYLSKEPWRSEKTLGWLFGNGKLREDSDVPMAGYEGETSNERLSSPRQTWDGVLDTSAKVNVFAWGLEEWSLMNLRTCLGNFVEHDWKVVLGVTTWLWWK 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1292 577 MobiDBLite consensus disorder prediction 293 333 - -
Glsi10g1292 577 Gene3D - 215 284 IPR036638 GO:0046983
Glsi10g1292 577 SMART finulus 225 276 IPR011598 GO:0046983
Glsi10g1292 577 MobiDBLite consensus disorder prediction 95 120 - -
Glsi10g1292 577 PANTHER TRANSCRIPTION FACTOR FAMA 127 452 IPR044283 GO:0003700|GO:0010052
Glsi10g1292 577 CDD bHLH_AtFAMA_like 222 293 - -
Glsi10g1292 577 MobiDBLite consensus disorder prediction 201 217 - -
Glsi10g1292 577 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 219 270 IPR011598 GO:0046983
Glsi10g1292 577 MobiDBLite consensus disorder prediction 298 330 - -
Glsi10g1292 577 MobiDBLite consensus disorder prediction 170 222 - -
Glsi10g1292 577 MobiDBLite consensus disorder prediction 95 114 - -
Glsi10g1292 577 FunFam Transcription factor SPEECHLESS 211 285 - -
Glsi10g1292 577 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 218 292 IPR036638 GO:0046983
Glsi10g1292 577 Coils Coil 263 287 - -
Glsi10g1292 577 Pfam Helix-loop-helix DNA-binding domain 220 271 IPR011598 GO:0046983
Glsi10g1292 577 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1292 Glsi-ChrGlsi10 8730570 8741740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1292 124 433 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 50.970 1.00e-85 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi10g1292 HLH 5.9e-10 No_clan