Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1286 ATGGAACAGAGCATCCTATGCAAATACACTGTGCATCACAGTGTTACCAAGAAGCACGCGAAGCCGGTTACAGCGAAGAAGGCCTCCGATGCGCACAATCCGATGGAACCCAGAGTGGTACGGATATCGGTCACTGATCCAGATGCCACAGACTCCTCCAGCGACGAGGAAGGAGAGTACTGTTTCGGTCGTCAGAGGGTGAAGCGTTACGTGAACCAGATTGACTTCGAAACAAACTACAAGAACGTCGCCGTTCCCAATCCCCGGAAGAGACCCGCCGGAGAAACTCCTTCTGGCCGGCGGCCGGTGAAAGTTTCCACCACAAATAACGGTAGGAAGTTCCGCGGAGTACGGCAAAGACCATGGGGAAAATGGGCGGCCGAGATTCGAGATCCCGCGCGACGTGTACGGGTCTGGTTAGGCACCTATGACACGGCGGAGGAAGCAGCTATGGTTTATGATAATGCGGCGATTAAGCTACGAGGTCCCGACGCTTTAACAAACTTTGTGACCCCACCGTCGAAGGATAAGGCGGAAGAAGCTGAAGTGGGAGTGAAGCCGGAAATGAACGTGATGGTGAAGTCAGAAGTTTCGGGGTCCGGGTACGATTCGGGAGAGGAGTCACATCGTCTATCGTCCCCTACATCAGTGCTGCAATTCAGAAGCAACTGCAGTGAAGAAACCGAACCGCAAAAGGCAATTGAACCGGAGAAGGAGAGCGAGGCAGAGACAGTGGAAGGGGAAGAAGTATTCCGGGAGTGTGAAGGCGAAACGAGTTTGGTGGAGGAGAAGGTGGAGTATTTGGAGTTTGATATGCCAACGTGGGACGAGGTGTTCAATTTCTCAACGCCAGAATACTCGCTGATGTTCGAAGAACCTTCACAGTTGCTGAATGAAACGACGGCGATATTCCCAGATGAAGATTTCAGCACGGACAACATCATTGTAGGGGAGTCAGAGATAGATTATGGGAAATCATACTCGCCATCGACGTTGTGCCAAATGGACGATTACTTCCAAGACATTTTGTTAGGTTCAGACCCTCTGGTGGTGCTGTGA 1059 0.5175 MEQSILCKYTVHHSVTKKHAKPVTAKKASDAHNPMEPRVVRISVTDPDATDSSSDEEGEYCFGRQRVKRYVNQIDFETNYKNVAVPNPRKRPAGETPSGRRPVKVSTTNNGRKFRGVRQRPWGKWAAEIRDPARRVRVWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFVTPPSKDKAEEAEVGVKPEMNVMVKSEVSGSGYDSGEESHRLSSPTSVLQFRSNCSEETEPQKAIEPEKESEAETVEGEEVFRECEGETSLVEEKVEYLEFDMPTWDEVFNFSTPEYSLMFEEPSQLLNETTAIFPDEDFSTDNIIVGESEIDYGKSYSPSTLCQMDDYFQDILLGSDPLVVL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1286 352 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Glsi10g1286 352 MobiDBLite consensus disorder prediction 228 248 - -
Glsi10g1286 352 Gene3D AP2/ERF domain 112 171 IPR036955 GO:0003700|GO:0006355
Glsi10g1286 352 MobiDBLite consensus disorder prediction 201 227 - -
Glsi10g1286 352 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Glsi10g1286 352 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Glsi10g1286 352 CDD AP2 113 169 IPR001471 GO:0003700|GO:0006355
Glsi10g1286 352 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 248 - -
Glsi10g1286 352 FunFam Ethylene-responsive transcription factor 2 112 171 - -
Glsi10g1286 352 MobiDBLite consensus disorder prediction 81 115 - -
Glsi10g1286 352 MobiDBLite consensus disorder prediction 198 248 - -
Glsi10g1286 352 SUPERFAMILY DNA-binding domain 113 170 IPR016177 GO:0003677
Glsi10g1286 352 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Glsi10g1286 352 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1286 Glsi-ChrGlsi10 8674383 8675441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1286 7 351 AP2-EREBP Transcription Factor Family AT4G27950 38.440 7.68e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi10g1286 AP2 2.4e-14 CL0081