Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1283 ATGGGCAAGAAACTGGACCTCTTGTTAATCTTCTCAGCAGCCTTCATGATTGGAGCAATGTTATCAAGTATTGGAGCTGAGCCCGTGGAAGATAAACAAGCATTACTTGATTTCCTTCACAACATGAGTCACTCTCGTCTTCTCAACTGGGATGGAAATGCTTCTGCGTGCAAAAGCTGGAGGGGAGTAATCTGCAACAATGAACAATCCAGAGTTATAGCCCTGCGACTACCCGGAGCTGGATTGAGTGGTCAAATCCCATCCAACACTCTAAGTCGCCTCTCAGCACTCCACACTCTCAGTCTTAGATCCAATAGTATAACGGGTCCTTTTCCTTCTGATTTTTCTGAGCTTAAAAATTTAACATATCTTTATCTCCAATTTAACAAGTTTTCTGGTCCATTGCCATCCGATTTTTCTGCTCTGACTAATCTTATTGTTGTCAATTTATCCAACAATTCTTTTAATGGGAGTATCCCTTCTTCTATTTCAAAATTGACTCATCTCACTTCTTTAGTCCTAGCCAATAACTCGCTTTCCGGTGAAATTCCTGATCTCAATATTCCCAGTCTGCAAGAGCTTAATTTAGCCAACAATAACCTTAGTGGACTTGTCCCTAAATCTCTACAGAGATTTCCAGGTTGGGCTTTTGTTGGTAACAACCTTACATCAGAACATGCACTTCCTCCAGCTTTTCCAGCTCGACCACCAAACACTCTTCCAACAAAGAAAACCACACTTAGTGAACCTGCATTATTTGGTATCATCCTTGGCGGTTGTGTGCTATTATTTGTATTAATTGTAGCTTTCATGCTTGCGCGCTTTTCTGAGAAAGGAGATGAAGATGTGCTACAAGTGAAGTCCAAGAAAAAAGAAGTCTCTTTGAAAGAAGATCCATCTGAAAGTCAAGACAAAAACAAAATTGTTTTCTTCGAGGGTCGCAATCTTGCATTTGACCTGGAGGACCTGTTGAGAGCATCTGCTGAGGTGCTTGGAAAGGGAACCTTTGGAACAGCTTACAAGGCTGCTCTAGATGATGTAACCACGGTAGTGGTTAAGAGATTGAAGGAAGTCACCGTTGGAAAACGTGAGTTCGAACAGCAGATGGAAGCTGTGGGGAGGATTAGGCACAACAATGTGAATGCACTGAGGGCATATTATTACTCCAAGGAAGAGAAACTTATGGTATATGATTACTATGAACAGGGTAGCGTTTCTGCAATGTTGCATGGAAGAAGAGGGGAAGAGAGAACTTGTTTAGACTGGGATAGCCGGCTGAGAATTGCACTAGGTGCGGCAAGAGGCATGGCTCATATACACGCTCAACATGGAGGGAAACTAGTCCATGGAAACGTAAAAGCCTCAAACGTCTTCATCAATTCCCAAGGATATGGCTGTGTATCTGATATGGGTTTGGCAACATTAATGAGTCCAATACCCACGCCAGCAATAAGGACTGCAGGCTACCGTGCCCCAGAAGTAACAGACATCCGAAAAGCAACTCATGCGTCTGATGTATACAGTTTGGGGGTGTTGCTGCTTGAGCTTCTGACTGGAAAATCCCCCATATATTCCTCGGGAGGTGACGAGGTTGTCCACCTGGTTAGGTGGGTGAATTCTGTGGTGAGAGAGGAGTGGACTGCAGAGGTGTTTGATGTCGAGTTGCTGAGATATCCAAATATAGAGGAAGAAATGGTAGAGATGTTACAAATAGGGATGGCATGTGTGGCGAGGATGCCAGAGCGGAGACCAAAAATGCCCGAGGTTGTAAGAATGGTGGAAGAGATTCGTAAGGTTGATACAGGAACTCAACCATCCACACAAGTTTCTACCCCAACCCCTCATGATGCAAGTGACGTACCTTCCGCCTATGTTCCACAATGA 1884 0.4395 MGKKLDLLLIFSAAFMIGAMLSSIGAEPVEDKQALLDFLHNMSHSRLLNWDGNASACKSWRGVICNNEQSRVIALRLPGAGLSGQIPSNTLSRLSALHTLSLRSNSITGPFPSDFSELKNLTYLYLQFNKFSGPLPSDFSALTNLIVVNLSNNSFNGSIPSSISKLTHLTSLVLANNSLSGEIPDLNIPSLQELNLANNNLSGLVPKSLQRFPGWAFVGNNLTSEHALPPAFPARPPNTLPTKKTTLSEPALFGIILGGCVLLFVLIVAFMLARFSEKGDEDVLQVKSKKKEVSLKEDPSESQDKNKIVFFEGRNLAFDLEDLLRASAEVLGKGTFGTAYKAALDDVTTVVVKRLKEVTVGKREFEQQMEAVGRIRHNNVNALRAYYYSKEEKLMVYDYYEQGSVSAMLHGRRGEERTCLDWDSRLRIALGAARGMAHIHAQHGGKLVHGNVKASNVFINSQGYGCVSDMGLATLMSPIPTPAIRTAGYRAPEVTDIRKATHASDVYSLGVLLLELLTGKSPIYSSGGDEVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGMACVARMPERRPKMPEVVRMVEEIRKVDTGTQPSTQVSTPTPHDASDVPSAYVPQ 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1283 627 Gene3D Transferase(Phosphotransferase) domain 1 401 612 - -
Glsi10g1283 627 ProSiteProfiles Protein kinase domain profile. 325 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1283 627 PANTHER OS05G0588300 PROTEIN 10 605 - -
Glsi10g1283 627 ProSitePatterns Protein kinases ATP-binding region signature. 331 362 IPR017441 GO:0005524
Glsi10g1283 627 ProSiteProfiles Leucine-rich repeat profile. 190 211 IPR001611 GO:0005515
Glsi10g1283 627 SUPERFAMILY Protein kinase-like (PK-like) 329 594 IPR011009 -
Glsi10g1283 627 Gene3D Ribonuclease Inhibitor 29 233 IPR032675 -
Glsi10g1283 627 FunFam Probable inactive receptor kinase RLK902 28 187 - -
Glsi10g1283 627 SUPERFAMILY L domain-like 36 212 - -
Glsi10g1283 627 SMART LRR_typ_2 142 166 IPR003591 -
Glsi10g1283 627 SMART LRR_typ_2 118 141 IPR003591 -
Glsi10g1283 627 SMART LRR_typ_2 188 211 IPR003591 -
Glsi10g1283 627 Pfam Protein kinase domain 328 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1283 627 MobiDBLite consensus disorder prediction 598 627 - -
Glsi10g1283 627 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Glsi10g1283 627 Pfam Leucine Rich Repeat 190 211 IPR001611 GO:0005515
Glsi10g1283 627 Pfam Leucine Rich Repeat 144 166 IPR001611 GO:0005515
Glsi10g1283 627 MobiDBLite consensus disorder prediction 600 617 - -
Glsi10g1283 627 Gene3D Phosphorylase Kinase; domain 1 290 399 - -
Glsi10g1283 627 FunFam pollen receptor-like kinase 1 294 399 - -
Glsi10g1283 627 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 400 607 - -
Glsi10g1283 627 Pfam Leucine rich repeat 86 131 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1283 Glsi-ChrGlsi10 8652747 8654745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1283 26 619 Receptor kinase-like Gene Family AT4G23740 55.212 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi10g1283 Pkinase 8.7e-34 CL0016