Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1280 ATGCCTGTGCTTGCCTCTCGTATTAGTCGCAATCCGGAAATCTTTCCCTGTCAGCAACGCATTCATTTTTCAACCACCTTATGCCAACTTGACCCTTGTCCCACACGCTCAACTTCGTGGGCAATGACAACAATTGAATCTTCAACACGTGAAGCAAATGCAGATGTACATCTTGCACAAAAGATGGAAGAGAAAAGAGAGGTGGTGTTGAAGCACAACCACGCTGGGGAATGCCTAAGGGTGATTGAACACAAGAAAGATGAAACTGGGTTTAGTGCACTCAAAATGCACAGCTTCGACAAGAGAGTGGAGACCTCGCGTGCAACTGTCATACGCAAAACTAAATCATTAAATACTCAACTCTTGTTCAACACAGATGAACTAAAAAATAATGATGCAGGAATCTATCATAAGACAGATTCCCAAATTAACCGCTCCTTTGGCAATGAATTCAGATATTCCCTTTCATTCTCAGATGAACTCTTGGACGTCTTGAGGCCGCCGAGTCTTAATAGCAAAGATAGTGCATCTACAGTTCCTGAAGACAAACCAGATTCGAGCAAGTGGACAAGATTACAAATGGAACCTACGCTGCCAATACATCTCAAGTTTGAAGATGTCAAATACAAGGGACCGGTAAAATGTTCAGAAGAAGGCAAGTACATTCTGCATGGGATAACTGGTTCAGTACGCCCAGGGGAGATTCTTGCTCTTTTGGGACCATCAGGAGGTGGAAAAACAACATTACTCAATGTCTTGAGTGGAAGGATCAGACTTAACGTTGGTTCCATCACTTATAATGGCAAATTATATACCAAGTCATTGAAGCAGAGGATTGGGTATGTGACGCAAGATGATGTTGTGTTCCCTCATCTTACAGTCAAGGAAACTCTGACTTATGCGGCTTTGCTCCGTCTTCCCAAAAGTCTTTCAAGAAGACAGAAAAAAGAGAGGGCTATGACTGTTTTAAATGAGCTATGCCTCGAAACGTGCCAAGATACAATAATTGGCGGCAAATCTATTAGAGGGGTTTCGGGTGGAGAGAGAAAAAGGGTCTGCATTGGCACTGAAATCCTGCTCAATCCATCACTTCTGTTCTTAGATGAACCAACATCTGGTCTTGATTCAACAACAGCATCGCGAATTGTTCAGATTCTTCAAAATATTGCAAAAGAGGGAAAGACAGTTGTGACAACAATACATCAGCCATCAAGTAGGCTCTTCAGCATGTTTGACAAACTCATTCTCTTGGGTAGAGGGAACACCCTGTACTGTGGAAAAGCATCCGATGCAATGATGTATTTCTCCTCTATTGGTTGTTCTCCATTGATAGCCATGAATCCGGCAGAATTTCTCATTGACCTTGCAAATGGGAACATGAATGACAAATCTATTCCATCAGAACTTGAGGATAAATTACAATATGGAACCAAAAAACGAGAGACAAAATATGGCAGACCCTCCCCAGTTGATGTCCATGAGTTTCTTGTAGAGGCCTATGAAATAAGACTTGCGGAAAGGGAGAAAACAAAGCTTCTTGAACCCGTGAAAGTAAAGGGAGAGGGTGGGATGCAAGGCAGGCCGCCATTCCTGAGGGACTTCGGGGCAACTTGGTCAGAACAATTTTGCATTCTCTTCCGGAGGGGCATTAGGGAGAGGCGTCATGAATACTTTAGCTGTGTTCGTGTGACCCAAGTAATATCAACAGCTATAATTGTAGGACTACTATGGTTGCACTCTAATGCCTCTTCTCCCAAGAGTCTTCAAGATCAGGCAGGACTGTTATTCTTTTTATCAGTATTCTGGGGCTTCTATCCTCTATTTACTGCCATTTTCATGTTCCCACAAGAAAGAGCAATGCTAGTGAAAGAGAGATCGATTGACATGTACAAACTTAGCGCATACTTCTTAGCTAGAAACTTTAGTGATGTTATATTGGAGCTTCTACTGCCTATAGTGTTCGTGGTCATTGTTTATTTCATGGTGGGCTTGAGGTTACACTTCTCCGCATTTTTCCTTACCATGCTGACAGTTTTTCTCAGCGTTCTGGCTGCTCAGGGTCTAGGACAAGCCATAAGTGCAGCATTTCTAGATGTGAAGAAAGCAACAACACTGGCCTCAGTTGTTGTTATGACCTTCATGCTAACTGGTGGATTTTTCAGCCAACAAGTCCCAGAATTTATGTCATGGGTGCGCTACGTCTCTTTCAACTACCACACATACAGGCTACTTGTGAAAATTCAGTATGGTTGTTCCGGTACAACTTCTGCATCAGGTTGCGTTGAGTCTCCTTTAATGAAAAAAATTGAGACTAAATTTGGGAGCGAAATGGAAGTTGGTGCTATGATAGCAATGATTATTTGTTATCGGCTAATGGCATATTTATTCTTAAGGAGAATGAATCTAAGGACCATTTCGTGTCCTGTATAA 2430 0.423 MPVLASRISRNPEIFPCQQRIHFSTTLCQLDPCPTRSTSWAMTTIESSTREANADVHLAQKMEEKREVVLKHNHAGECLRVIEHKKDETGFSALKMHSFDKRVETSRATVIRKTKSLNTQLLFNTDELKNNDAGIYHKTDSQINRSFGNEFRYSLSFSDELLDVLRPPSLNSKDSASTVPEDKPDSSKWTRLQMEPTLPIHLKFEDVKYKGPVKCSEEGKYILHGITGSVRPGEILALLGPSGGGKTTLLNVLSGRIRLNVGSITYNGKLYTKSLKQRIGYVTQDDVVFPHLTVKETLTYAALLRLPKSLSRRQKKERAMTVLNELCLETCQDTIIGGKSIRGVSGGERKRVCIGTEILLNPSLLFLDEPTSGLDSTTASRIVQILQNIAKEGKTVVTTIHQPSSRLFSMFDKLILLGRGNTLYCGKASDAMMYFSSIGCSPLIAMNPAEFLIDLANGNMNDKSIPSELEDKLQYGTKKRETKYGRPSPVDVHEFLVEAYEIRLAEREKTKLLEPVKVKGEGGMQGRPPFLRDFGATWSEQFCILFRRGIRERRHEYFSCVRVTQVISTAIIVGLLWLHSNASSPKSLQDQAGLLFFLSVFWGFYPLFTAIFMFPQERAMLVKERSIDMYKLSAYFLARNFSDVILELLLPIVFVVIVYFMVGLRLHFSAFFLTMLTVFLSVLAAQGLGQAISAAFLDVKKATTLASVVVMTFMLTGGFFSQQVPEFMSWVRYVSFNYHTYRLLVKIQYGCSGTTSASGCVESPLMKKIETKFGSEMEVGAMIAMIICYRLMAYLFLRRMNLRTISCPV 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1280 809 Pfam ABC-2 type transporter 401 465 IPR043926 GO:0140359
Glsi10g1280 809 MobiDBLite consensus disorder prediction 168 188 - -
Glsi10g1280 809 CDD ABCG_EPDR 199 426 - -
Glsi10g1280 809 Pfam ABC transporter 223 372 IPR003439 GO:0005524
Glsi10g1280 809 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 202 444 IPR003439 GO:0005524
Glsi10g1280 809 Pfam ABC-2 type transporter 540 749 IPR013525 GO:0016020|GO:0140359
Glsi10g1280 809 Gene3D - 201 437 IPR027417 -
Glsi10g1280 809 ProSitePatterns ABC transporters family signature. 344 358 IPR017871 GO:0005524|GO:0016887
Glsi10g1280 809 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 178 794 - -
Glsi10g1280 809 FunFam ABC transporter G family member 22 212 438 - -
Glsi10g1280 809 SMART AAA_5 232 421 IPR003593 GO:0016887
Glsi10g1280 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 432 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1280 Glsi-ChrGlsi10 8632264 8637531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1280 222 486 Calmodulin-binding Proteins AT2G36910 27.473 1.61e-15 79.3