Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1278 ATGTCAAGCAATGCAATAACTCTTTTTATCTTGTTTCTTAACATCTCCTTGTTTCCAGCCATCTCTGCTCTGAACCAGGAAGGTCTCTCTCTACTTTCATGGCTTTCAACCTTCAATTCCTCTAATTCTGCTACTTCGTTCTCTTCATGGAATCCAACCCACAAAAGTCCTTGCACATGGGATTATATTAAATGTTCCAAAGATGGGTTTGTTTCAGACATCATAATAACGTCTATTAATCTTGGTAGCAGCTTCCCTACGCAGCTCCTTTCTTTCGGTCACCTTACCACTCTAGTCATCTCAAATGGAAATCTTACTGGTGAGATTCCAAGTTCGGTGGGAAACTTGTCGTCTTTGATTACTTTGGACCTCAGCTTCAATGCTTTATCAGGAACCATTCCCGCAGAAATAGGAATGTTACCAAATCTACAGTGGTTATCATTGAACTCAAATTCCTTATACGGTGGAATTCCGACAGAAATGGGAAACTGTTCAAAGCTTCGGCAGCTGGAACTGTATGACAACCAGCTCTCTGGTAAGATTCCTGGAGAAATAGGCCGGTTGAAGGATCTTGAAACGTTTCGAGCAGGTGGAAATCAGGGTATTCATGGTGAAATTCCAATGCAGATATCAAACTGCAAAGCTCTCATTTTTCTGGGTCTTTCTGATACTGGGATCTCAGGGGAGATTCCATCAAGTATAGGACAACTTACCAATCTCCAGACGCTTTCAGTCTACACAGCAAACCTCACAGGTCACATCCCACCGCAGATTCATAACTGCTCAGCCTTGGAGAATTTGTTTCTGTATGAAAATCAGCTTTCTGGTCATATTCCTTACGAATTGGGTTCCATGAAAAGCCTCAGGAGGGTATTGCTGTGGCGGAACAATTTAACTGGCACCATTCCAGAAAGTGTGGGAAACCTTACAAGCCTGATGGTTATAGATTTCTCTTTGAATTCTTTTAGTGGCGAGCTCCCTGTGACACTCAGAAATTTACTCTCGTTGGAAGAGCTTCTAGTGTCATATAACAACATTTCTGGAGAAATACCTTCCTATATCGGCAACTTTTCCAGACTGAAGCAACTCGAATTAGATAACAACAGATTCTCTGGCGAGATTCCACCTGTTATAGGACAACTGAAAGAACTCACCTTGTTCTTTGCCTGGCAGAACCAGCTACACGGAAGCATGCCAGCAGAACTATCCAACTGTGAGAAACTTGAAGCAGTTGATCTTTCTCACAACTTCCTCAATGGGTCAATTCCAAGTTCTCTCTTTCATCTAGAGAACTTAACTCAATTACTGTTGATATCAAATAGACTTTCAGGTCAAATTTCACCAGATATTGGCAGCTGCACTAGCTTGGTCAGGTTACGGCTGGGATCAAACAATTTTACTGGCCAAATTCCACCAGAAATAGGTCTTTTAAGCAGTTTGAGCTTTCTGGAATTGTCAGATAATCTACTTACTGGAGAAATTCCCCGTGAAATTGGTAACTGCCATCAGCTAGAAATGCTTGACTTGCACAGGAATCAGCTGCAAGGAACGATTCCTTCCTCATTCGAATTCCTAGTTGTTCTTAATGTTTTAGACCTCTCTGCAAACAGAATAACTGGGAGTATTCCCCAAAATTTGGGCAAGCTTACATCTTTAAATAAGTTGATAATCAGTGGAAACAGTATTACAGGTTCGATCCCACAGTCACTGGGCCTTTGTAAGAATTTGCAGTTACTGGATATAAGCAACAACAGAATCGCTGGCTCCATTCCGGATGAGATTGGTCAATTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTAACAGGCCCCATTCCAGAGAGCTTCTCAAATCTCTCAAAACTTTCCAACTTGGACCTCTCTTACAACAAGTTAACAGGCAGCCTCAGAGTACTGGGTAGTCTTGACAATTTAGTGTCTATGAATGTCTCCTACAATCGCTTTTCTGGTTCTCTTCCTGATACAAAATTCTTTCGTGATCTCCCTGCTGCTGCATTTGCTGGTAATCCTGACCTCTGCATTAACAAGTGTGACGTGAATGGAAATCGCCGGGGCATTAAGTCAATAAGGAATATTATTATCTACACTTTTCTTGGTGTTATCTTAACAGCTATGTTCGTGACTTTTGGAGTAATTTTAGCTCTCAGAATTCAAGGGGCCACATTTGGGAGGAATTTTGATGAAGGTGGTGAAATGGAATGGGCTTTTACTCCATTTCAGAAACTCAACTTCTCCATCAATGACATTGTCACAAAGTTATCAGATTCAAACATTGTGGGAAAGGGTTGCTCAGGAATTGTTTATCGTGTAGAGACTCCAATGAAACAGACAATTGCAGTGAAGAAGCTCTGGCCAATAAAGAATGACGAGCCACCAGAGAGAGATCTGTTTTCTGCAGAAGTTCAGACCCTTGGATCAATAAGACATAAGAATATAGTCAGGCTCTTGGGATGCTGTAATAATGGAAGAACTAGATTGCTCTTGTTTGATTATATCTGTAATGGGAGTCTGTCTGGGTTGCTCCATGAAAAGAGGTTGTTCTTGGACTGGGATGCGAGGTATAAGATCATATTGGGAGCAGCTCATGGTTTAGAATATCTTCATCATGATTGTATCCCTCCAATCGTCCATCGGGACATTAAGGGTAACAACATCTTGGTAGGGTCACAATTTGAAGCTGTTCTTGCAGATTTTGGGCTTGCAAAACTAGTAAATTCCTCGGAATGTTCAAGAGCCTCTGCTATCGTTGCAGGTTCTTATGGCTACATAGCACCCGAATACGGATACAGTTTAAGGATCACAGAGAAGAGCGATGTGTATAGTTACGGTGTGGTGTTGCTGGAGGTCCTAACGGGGATGGAGCCAACAGATAACAGGATTCCAGAGGGTGCCCACATTGTGACATGGGTTAACAGGGAAATCCGAGAGAAGAAAATAGAATTCACAACAATTCTTGACCAGCAACTAATATTGCAATGTGGAACACGAACCCAAGAAATGCTTCAAGTGCTAGGGGTGGCTCTCCTCTGTGTGAATCCATCCCCCGAAGAACGACCTACCATGAAAGATGTTACAGCAATGCTCAAGGAGATCAGGCATGAATGTGACAATTTCGAGAAATCCAATTTTCTCCACAAGGGGACACTCGCCAATCCAAAAGTAGCAGTTCAATGTTCAAGTTTCTCCAGATCATGTGAACCCCTAATAGAATCATCATCATCTTCTTCTTCTTCTTCGTAA 3270 0.419 MSSNAITLFILFLNISLFPAISALNQEGLSLLSWLSTFNSSNSATSFSSWNPTHKSPCTWDYIKCSKDGFVSDIIITSINLGSSFPTQLLSFGHLTTLVISNGNLTGEIPSSVGNLSSLITLDLSFNALSGTIPAEIGMLPNLQWLSLNSNSLYGGIPTEMGNCSKLRQLELYDNQLSGKIPGEIGRLKDLETFRAGGNQGIHGEIPMQISNCKALIFLGLSDTGISGEIPSSIGQLTNLQTLSVYTANLTGHIPPQIHNCSALENLFLYENQLSGHIPYELGSMKSLRRVLLWRNNLTGTIPESVGNLTSLMVIDFSLNSFSGELPVTLRNLLSLEELLVSYNNISGEIPSYIGNFSRLKQLELDNNRFSGEIPPVIGQLKELTLFFAWQNQLHGSMPAELSNCEKLEAVDLSHNFLNGSIPSSLFHLENLTQLLLISNRLSGQISPDIGSCTSLVRLRLGSNNFTGQIPPEIGLLSSLSFLELSDNLLTGEIPREIGNCHQLEMLDLHRNQLQGTIPSSFEFLVVLNVLDLSANRITGSIPQNLGKLTSLNKLIISGNSITGSIPQSLGLCKNLQLLDISNNRIAGSIPDEIGQLQGLDILLNLSWNSLTGPIPESFSNLSKLSNLDLSYNKLTGSLRVLGSLDNLVSMNVSYNRFSGSLPDTKFFRDLPAAAFAGNPDLCINKCDVNGNRRGIKSIRNIIIYTFLGVILTAMFVTFGVILALRIQGATFGRNFDEGGEMEWAFTPFQKLNFSINDIVTKLSDSNIVGKGCSGIVYRVETPMKQTIAVKKLWPIKNDEPPERDLFSAEVQTLGSIRHKNIVRLLGCCNNGRTRLLLFDYICNGSLSGLLHEKRLFLDWDARYKIILGAAHGLEYLHHDCIPPIVHRDIKGNNILVGSQFEAVLADFGLAKLVNSSECSRASAIVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEVLTGMEPTDNRIPEGAHIVTWVNREIREKKIEFTTILDQQLILQCGTRTQEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHECDNFEKSNFLHKGTLANPKVAVQCSSFSRSCEPLIESSSSSSSSS 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1278 1089 SUPERFAMILY RNI-like 293 661 - -
Glsi10g1278 1089 SUPERFAMILY RNI-like 80 394 - -
Glsi10g1278 1089 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Glsi10g1278 1089 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Glsi10g1278 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Glsi10g1278 1089 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Glsi10g1278 1089 Gene3D Transferase(Phosphotransferase) domain 1 842 1059 - -
Glsi10g1278 1089 Gene3D Ribonuclease Inhibitor 263 429 IPR032675 -
Glsi10g1278 1089 Gene3D Ribonuclease Inhibitor 430 690 IPR032675 -
Glsi10g1278 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1056 - -
Glsi10g1278 1089 SMART LRR_typ_2 333 356 IPR003591 -
Glsi10g1278 1089 SMART LRR_typ_2 140 164 IPR003591 -
Glsi10g1278 1089 SMART LRR_typ_2 357 381 IPR003591 -
Glsi10g1278 1089 SMART LRR_typ_2 477 501 IPR003591 -
Glsi10g1278 1089 SMART LRR_typ_2 116 139 IPR003591 -
Glsi10g1278 1089 SMART LRR_typ_2 429 453 IPR003591 -
Glsi10g1278 1089 SMART LRR_typ_2 573 597 IPR003591 -
Glsi10g1278 1089 SMART LRR_typ_2 285 309 IPR003591 -
Glsi10g1278 1089 SMART LRR_typ_2 622 645 IPR003591 -
Glsi10g1278 1089 SMART LRR_typ_2 525 549 IPR003591 -
Glsi10g1278 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Glsi10g1278 1089 Gene3D Phosphorylase Kinase; domain 1 738 841 - -
Glsi10g1278 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
Glsi10g1278 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 739 841 - -
Glsi10g1278 1089 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Glsi10g1278 1089 ProSiteProfiles Protein kinase domain profile. 763 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1278 1089 PRINTS Leucine-rich repeat signature 119 132 - -
Glsi10g1278 1089 PRINTS Leucine-rich repeat signature 622 635 - -
Glsi10g1278 1089 ProSiteProfiles Leucine-rich repeat profile. 575 597 IPR001611 GO:0005515
Glsi10g1278 1089 SUPERFAMILY Protein kinase-like (PK-like) 750 1045 IPR011009 -
Glsi10g1278 1089 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 390 1039 - -
Glsi10g1278 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Glsi10g1278 1089 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Glsi10g1278 1089 Pfam Leucine rich repeat 604 658 IPR001611 GO:0005515
Glsi10g1278 1089 Pfam Leucine rich repeat 504 562 IPR001611 GO:0005515
Glsi10g1278 1089 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Glsi10g1278 1089 Gene3D Ribonuclease Inhibitor 190 262 IPR032675 -
Glsi10g1278 1089 Coils Coil 1031 1051 - -
Glsi10g1278 1089 SMART serkin_6 763 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1278 1089 Pfam Protein kinase domain 766 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1278 Glsi-ChrGlsi10 8617468 8620957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1278 23 1076 Receptor kinase-like Gene Family AT5G56040 46.691 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi10g1278 Pkinase 1.2e-40 CL0016