Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1266 ATGCAGAGCTTCTACTACCTCAGCACCCAACTGCCAGCATGGACACCAAGCGGCCCATATCCGACACACCACCGCCTCATACCACCGATCCAAACCGTCAGGCTTCGATCACCACCGCCCATCTCCGCAGTGGCCGCACCGCCCAAAACTCGAAAGATCCACTCGATGCCGGCGGAGAAGATAGAAGTTTTCAAGTCACTGGAGGGCTGGGCTTCGGAGGGGCTGCTGCCGCTGCTGAAGCCCGTTGAGCAAAGCTGGCAACCTCAGAACTTCGTGCCCGACTCTTCATTGCCGTTCGATGAATTTATGGATCGAGTGAAGGCCCTGCGCGATCGGACGACTGAGCTTCCAGATGAGTACTTCGTGGTTTTGGTGGGTGATATGATCACCGAGGAAGCACTGCCCACGTATCAGAGCATGATAAACAGCCTCGATGCTGTCGGGGACGAAACTGGAGCAAGTCCGGATCCATGGGCGGTGTGGACCCGCTCTTGGACTGCAGAGGAGAATAGGCATGGCGACTTGCTTAAAACCTATTTGTATCTATCGGGTCGAGTTGATATGGTCATGGTTGAGAAGACCGTCCAGTACTTGATTGGAGCAGGCATGGATCCAGGAACCGAAAACAACCCGTATTTGGGATTTGTGTATACGTCCTTTCAAGAACGAGCCACCTTTGTATCTCACGGTAACACGGCTCGGTTAGCCAAGGAAGGGGGCGATCCGGTGCTAGCACGCATATGTGGCACCATTGCGGCAGATGAGAAACGCCACGAGAATGCCTACACGAGGATCGTCGAGAAGCTTCTAGAAGTGGACTCCACGAGCGCAATGGTTGCCATTGCAGATATGATGCAGAAGAAAATAACAATGCCAGCTCATTTAATGTACGACGGAAGGGACCCACGCCTATTTGAGCATTTCTCCGCTGTGGCACAGCGGCTGGGTGTGTACACAGCCAATGATTACGCAGACATCTTGGAGTTCTTGATCGAACGGTGGAGATTGGAGAAATTGGAGGGGTTGACGAGCGAAGGGAAGCGTGCACAGGATTTCGTGTGTGGGCTAGCACCGAGGATTAGAAGGTTGCAGGAGCGAGCCGATGAGCGGGCGCGCAAGATGGAGCCGCATGGCGTGAAGTTCAGCTGGATCTTCAACAAAGAGGTGGCCCTGAGGAAGTGA 1182 0.5415 MQSFYYLSTQLPAWTPSGPYPTHHRLIPPIQTVRLRSPPPISAVAAPPKTRKIHSMPAEKIEVFKSLEGWASEGLLPLLKPVEQSWQPQNFVPDSSLPFDEFMDRVKALRDRTTELPDEYFVVLVGDMITEEALPTYQSMINSLDAVGDETGASPDPWAVWTRSWTAEENRHGDLLKTYLYLSGRVDMVMVEKTVQYLIGAGMDPGTENNPYLGFVYTSFQERATFVSHGNTARLAKEGGDPVLARICGTIAADEKRHENAYTRIVEKLLEVDSTSAMVAIADMMQKKITMPAHLMYDGRDPRLFEHFSAVAQRLGVYTANDYADILEFLIERWRLEKLEGLTSEGKRAQDFVCGLAPRIRRLQERADERARKMEPHGVKFSWIFNKEVALRK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1266 393 PIRSF Dlt9_acylACP_des 20 391 IPR005067 GO:0006631|GO:0045300
Glsi10g1266 393 Pfam Fatty acid desaturase 59 385 IPR005067 GO:0006631|GO:0045300
Glsi10g1266 393 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 49 389 IPR005067 GO:0006631|GO:0045300
Glsi10g1266 393 FunFam Stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic 44 391 - -
Glsi10g1266 393 ProSitePatterns Fatty acid desaturases family 2 signature. 309 328 IPR005803 GO:0006633|GO:0016491
Glsi10g1266 393 CDD Acyl_ACP_Desat 59 367 IPR005067 GO:0006631|GO:0045300
Glsi10g1266 393 Gene3D Ribonucleotide Reductase, subunit A 45 391 IPR012348 GO:0016491
Glsi10g1266 393 SUPERFAMILY Ferritin-like 50 389 IPR009078 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1266 Glsi-ChrGlsi10 8539868 8541665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1266 34 391 Acyl Lipid Metabolism Gene Families AT1G43800 76.648 0.0 586