LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g1264	ATGGCGCTTTTCATTCGTGTGCCTCTGACCCTCTCCCCCTATATATATTGCCCCGGTGTACGCGCAGTTTTCCCACAACCAATACTCACTCGTCGATTCACACGATTATCGTCTTATTCATCTTCGTCCGTTGTAGCCATGTCTAACACAACTGGTCAGGTCATCAAATGCAAAGCCGCGGTGGCATGGGAAGCAGGCAAGCCGCTTGTGATGGAAGAAGTAGAGGTAGCACCGCCACAGGCTGGTGAAGTGCGTTTGAAGATCCTTTATACCTCCCTTTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGCCAGACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGAATTGTGGAGAGCGTAGGAGAGGGTGTGACTAATCTCAAACCGGGTGACCATGCCCTCCCTGTGTTCACTGGGGAGTGTGGGGAATGCCGACATTGTAAGTCAGTGGAGAGCAACATGTGCGACCTTCTCAGGATCAACACTGATAGGGGTGTTATGCTTAGCGACGGCAAGGCTAGATTCTCCATAAATGGACAGCCCATATACCACTTTGTGGGAACCTCTACATTTAGTGAATACACTGTTATCCATGCTGGATGTGTTGCAAAGATCAACCCTGCTGCCCCGCTTGACAAAGTTTGTATTCTCAGTTGCGGAATATGCACAGGTCTTGGTGCTACTATAAACGTTGCAAAGCCACCTCCTGGTTCTACTGTTGCAGTCTTTGGACTGGGAGCTGTTGGCCTCGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAAAATCATTGGAGTTGATTTAGTTTCCAGCCGATTTGAAGAAGCCAAAAAGTTTGGGGTCACTCACTTCGTGAACCCGAAAGAACACGACAAACCTGTTCAAGAGGTAATAGCTGAAATGACTGATGGAGGAGTAGACCGTGCTCTTGAATGTACTGGAAGCGTGCAAGCCATGATTTCAGCATTCGAATGCGTTCACGATGGTTGGGGTGTTGCCGTACTAGTTGGTGTGCCAAGCAAAGACGATGCATTCAAAACTCATCCTATAAATTTTTTGAACGAGAGGACTCTCAAGGGTACCTTCTATGGTAATTACAAACCCCGCACTGATCTTCCTTCTGTAGTGGAGAAGTACATGAAAGGGGAGCTGGAACTGGAGAAATTTATCACTCACTCAGTCCCATTCTCGGAGATTAACAAGGCATTTGAGTACATGCTGAAAGGGGAGTCCATCAGGTGCATCATCCGTATGGAAAATTGA	1281	0.4778	MALFIRVPLTLSPYIYCPGVRAVFPQPILTRRFTRLSSYSSSSVVAMSNTTGQVIKCKAAVAWEAGKPLVMEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTNLKPGDHALPVFTGECGECRHCKSVESNMCDLLRINTDRGVMLSDGKARFSINGQPIYHFVGTSTFSEYTVIHAGCVAKINPAAPLDKVCILSCGICTGLGATINVAKPPPGSTVAVFGLGAVGLAAAEGARISGASKIIGVDLVSSRFEEAKKFGVTHFVNPKEHDKPVQEVIAEMTDGGVDRALECTGSVQAMISAFECVHDGWGVAVLVGVPSKDDAFKTHPINFLNERTLKGTFYGNYKPRTDLPSVVEKYMKGELELEKFITHSVPFSEINKAFEYMLKGESIRCIIRMEN	426

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g1264	426	CDD	alcohol_DH_plants	55	423	-	-
	Glsi10g1264	426	FunFam	Alcohol dehydrogenase class-P	229	367	-	-
	Glsi10g1264	426	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	115	129	IPR002328	GO:0008270\|GO:0016491
	Glsi10g1264	426	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	215	389	IPR036291	-
	Glsi10g1264	426	Gene3D	-	229	367	-	-
	Glsi10g1264	426	SUPERFAMILY	GroES-like	375	423	IPR011032	-
	Glsi10g1264	426	PANTHER	ALCOHOL DEHYDROGENASE	52	422	-	-
	Glsi10g1264	426	Pfam	Zinc-binding dehydrogenase	252	377	IPR013149	-
	Glsi10g1264	426	SUPERFAMILY	GroES-like	50	232	IPR011032	-
	Glsi10g1264	426	Gene3D	-	65	416	-	-
	Glsi10g1264	426	Pfam	Alcohol dehydrogenase GroES-like domain	82	209	IPR013154	-
	Glsi10g1264	426	FunFam	alcohol dehydrogenase 1-like isoform X1	65	228	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g1264	Glsi-ChrGlsi10	8525528	8528889	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g1264	83	426	Monolignol Biosynthesis Gene Families	AT1G72680	26.000	5.86e-15	73.9