Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1254 ATGTTATATAAGTGCTTAACGTGGCTGGAGGATGAGGAGGTAGGTTCTAGCGGGTGCGATTTCTGGGTGACACAGAGAGAGAGAAAGATGTCGAGGACGCTGGTGCAGCCGATAGGGCAGAAGAAGCTGACGAACGTGGCGGTGGTGCGTCTGAAGAAGCATGGAATACGTTTCGAGATCGCCTGCTTTCCAAACACCGTTCTTTCTTGGCGTTCTGGCGTGGAGAAAGATCCGGATGAAGTATTACAGTCGCAGACTGTTTATTCAAATGTTTCAAAAGGGATTCTTGCAAAGTCAAAGGATTTGATTGCTGCCTTTGGGACAGATGATCAGTCAAAAATATGTTTAGAGATTTTAAAGAAAGGAGAGCTTCAGGTTGCTGGGAAAGAGAGGGAATCTATTTTATCCAGTCAGTTCAGGGATATTGCGACCATTGTTATGGAAAAGACATACAATCCTGAAACTCAACGCCCTTACACAATCAGTATGATTGAACGTTTGATGCACGATATTCATTTTGCTGTTGACTCAAATAGCAGCTCAAAGAAGCAGGCTCTGGAAGTTATTCAAGAGCTTCAAAAGCACTTTCCAATAAAACGCTGTCCACTAAGAATACGAGTTACTGCTCCTGAGGAGAAAGTATATTCCCTTCTAGATAAGCTGAGTGCATGGAAAGCGAGCATTATTTCTAAAGAAGGATCTGCCGGTCAGCTATCTGTTATATTTGAATTGGAACCTGGTCTATATAAAGACTGTCACGACTTTGTTATGAACAACGTGCATGGAAGATTTGACGTTCTTGCACACTCTCTCTGTGTGGGTGGGGATACCCAGGTGGAGCAATACAATGATCATGAGGATCTGCCTGCTCCATTGCCCAGAGAAACTCGTGATTCTGTACTTGAACTGAATGAAAAACTACAAAAGCAGACAATTTCTATAAACAGTGGGCCTACCGAGGGACAACAAAAGCAAAACAAGTGCGGCACATGTAATGTTTCTTTTGAAGACTCTAAGCTTTATAGGGAACACCATAAGAGTGAGTGGCACAAGCACAATATGAAGCGCAAGACCAGGCAACTCCCTCCCCTTACCGAGGAAGAATGCAGGGCAGACGTGGAACTGGGTGACTCAAAATCTGATTTGAAGGATTACTCATTTTGA 1164 0.4364 MLYKCLTWLEDEEVGSSGCDFWVTQRERKMSRTLVQPIGQKKLTNVAVVRLKKHGIRFEIACFPNTVLSWRSGVEKDPDEVLQSQTVYSNVSKGILAKSKDLIAAFGTDDQSKICLEILKKGELQVAGKERESILSSQFRDIATIVMEKTYNPETQRPYTISMIERLMHDIHFAVDSNSSSKKQALEVIQELQKHFPIKRCPLRIRVTAPEEKVYSLLDKLSAWKASIISKEGSAGQLSVIFELEPGLYKDCHDFVMNNVHGRFDVLAHSLCVGGDTQVEQYNDHEDLPAPLPRETRDSVLELNEKLQKQTISINSGPTEGQQKQNKCGTCNVSFEDSKLYREHHKSEWHKHNMKRKTRQLPPLTEEECRADVELGDSKSDLKDYSF 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1254 387 Gene3D Classic Zinc Finger 318 376 - -
Glsi10g1254 387 FunFam SBDS, ribosome maturation factor 129 201 - -
Glsi10g1254 387 MobiDBLite consensus disorder prediction 359 387 - -
Glsi10g1254 387 Pfam SBDS protein, domain II 140 200 IPR018978 GO:0042254
Glsi10g1254 387 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 45 131 IPR019783 -
Glsi10g1254 387 SUPERFAMILY beta-beta-alpha zinc fingers 315 369 IPR036236 -
Glsi10g1254 387 ProSitePatterns Zinc finger C2H2 type domain signature. 328 350 IPR013087 -
Glsi10g1254 387 Gene3D - 129 201 IPR037188 -
Glsi10g1254 387 Gene3D - 30 125 IPR036786 -
Glsi10g1254 387 FunFam SBDS, ribosome maturation factor 32 125 - -
Glsi10g1254 387 NCBIfam ribosome assembly factor SBDS 42 256 IPR002140 GO:0042256
Glsi10g1254 387 SUPERFAMILY Hypothetical protein AF0491, middle domain 127 200 IPR037188 -
Glsi10g1254 387 Pfam SBDS protein, C-terminal domain 204 264 IPR046928 -
Glsi10g1254 387 Gene3D - 203 280 - -
Glsi10g1254 387 PANTHER RIBOSOME MATURATION PROTEIN SBDS 30 268 IPR039100 -
Glsi10g1254 387 SUPERFAMILY FYSH domain 42 125 IPR036786 -
Glsi10g1254 387 MobiDBLite consensus disorder prediction 346 387 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1254 56 387 C2H2 Transcription Factor Family AT1G43860 56.812 1.24e-135 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi10g1254 SBDS_C 3.1e-29 CL0437