Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1253 ATGTACATGACAGATTCCTACTCCAGTGAGAGTTATGAGAAGTACTTCCATGATTCACCAACAGAAGAACTGACAGAACCATCTAGTTCTGGCTTCTCAGGAAACTCATTTAACCCTGACGGTGCCTCTTCTTATCAGCTTAGAGCTAGTTCTGGAGCTTCTGTGGTTACTAACAACCCATTTGATACTTCTTTCATGTCCACAAGACATCATGATGCCTGTCAGTCCAACTTTGGATCAGATTTCTTGGAAAATGGAAGCCTGGATCCACTTGACTTTGATGGTGAAATGAGATTGAAACTACAAGAATTAGAGAGGGCACTGCTTGATGATAACAATGATGATGATGATGAGGAAGACATACTTGGGACTGCTCAAAGCATGGAGATTGATGCCGAGTGGGCTGATCCCATTCAGAATATGCTGCACCATGACTCACCAAAGGAATCATCATCCTCAGATTCCAATCTTAGTAGCATCAGTAGCAACAAAGAAATATCACAAATCTCTCCTCGGACCGCCAAGCAATTGCTTTTTGAATGTGCTGCTGCACTTTCAGAAGGAAACGTAGAGGAAGCATCATCTATGATAAATGAACTCCGGCAGATGGTATCAATTCAGGGAGATCCTCCTCAAAGGATTGCAGCCTATATGGTGGAAGGACTTGCAGCTCGCATGGCTTCCTCTGGCAGCTGTATTTATAAAGCACTGAAATGCAAGGAACCTCCTTCTTCAGACCGTCTAGCAGCCATGCAGATACTGTTTGAGGTGTGCCCCTGTTTTAAATTTGGATTTATTGCTGCAAACGGTGCAATTACAGAGGCAGTTAAAGGTGAAAAGGAAGTCCACATAGTAGATTTTGACATTAATCAAGGAAGCCAATACATAACTCTGATACAAGCACTTGCTTCAAGGTCAGGTAAGCCACCCCATGTGAGATTGACTGGGGTTGATGATCCTGAGTCTGTCCAGCGACCTGTTGGAGGCCTAAAGAACATAGGACAGAGACTTGAAAAACTGGCAGAAGCGCTTGGTTTGCCATTTGAATTTCGAGCAGTGGCATCAAGGACTTCGATTGTCACTCCATCAATGCTCAACTGTCGTTCTGGGGAAGTACTTGTGGTGAATTTTGCATTCCTGCTTCATCACATGCCAGATGAGAGTGTTTCAACAGTAAATGAACGTGACCAACTTCTGCGCATGGTGAAGAGCCTGAATCCAAAACTTGTAACTGTTGTGGAACAAGATATGAACACCAACACAACTCCGTTTTTCCCAAGATTTGTTGAAGCCTACAATTACTACTCTGCTGTGTTTGAGTCACTGGATGCAACTCTTCCTAGAGAGAGTCAGGACAGGGTGAATGTTGAAAGGCAATGTTTAGCGAGGGACATTGTCAATATTGTTGCATGCGAAGGTGAGGATAGGATAGAAAGATATGAAGTTGCTGGAAAATGGAGAGCAAGGATGAAAATGGCAGGCTTCACTTCATCCCCAATGAGCGCAAATGTGACTGACGCAATTCGTAAACTCATCAAGCAATATTGTGACAGGTACAAGATAAAGGATGAGATGGGTGCACTTCATTTTGGGTGGGAAGATAAGAACTTGATTGTTTCTTCAGCATGGAGGTGA 1635 0.4349 MYMTDSYSSESYEKYFHDSPTEELTEPSSSGFSGNSFNPDGASSYQLRASSGASVVTNNPFDTSFMSTRHHDACQSNFGSDFLENGSLDPLDFDGEMRLKLQELERALLDDNNDDDDEEDILGTAQSMEIDAEWADPIQNMLHHDSPKESSSSDSNLSSISSNKEISQISPRTAKQLLFECAAALSEGNVEEASSMINELRQMVSIQGDPPQRIAAYMVEGLAARMASSGSCIYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFIAANGAITEAVKGEKEVHIVDFDINQGSQYITLIQALASRSGKPPHVRLTGVDDPESVQRPVGGLKNIGQRLEKLAEALGLPFEFRAVASRTSIVTPSMLNCRSGEVLVVNFAFLLHHMPDESVSTVNERDQLLRMVKSLNPKLVTVVEQDMNTNTTPFFPRFVEAYNYYSAVFESLDATLPRESQDRVNVERQCLARDIVNIVACEGEDRIERYEVAGKWRARMKMAGFTSSPMSANVTDAIRKLIKQYCDRYKIKDEMGALHFGWEDKNLIVSSAWR 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1253 544 MobiDBLite consensus disorder prediction 22 45 - -
Glsi10g1253 544 Pfam GRAS domain family 175 544 IPR005202 -
Glsi10g1253 544 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 151 538 IPR005202 -
Glsi10g1253 544 MobiDBLite consensus disorder prediction 1 45 - -
Glsi10g1253 544 MobiDBLite consensus disorder prediction 151 165 - -
Glsi10g1253 544 MobiDBLite consensus disorder prediction 142 165 - -
Glsi10g1253 544 ProSiteProfiles GRAS family profile. 165 544 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1253 Glsi-ChrGlsi10 8455580 8457214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1253 5 544 GRAS Transcription Factor Family AT1G21450 65.631 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Glsi10g1253 GRAS 6.3e-138 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1253 10 8455580 8457214 Glsi08g1036 08 7615465 7617222 CCT
Glsi10g1253 10 8455580 8457214 Glsi10g1253 10 8455580 8457214 ECH