Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1250 ATGTCAAATTACGGTGTGGGTTATGATGATGAAAATGGTGGGTTGCTTAGGTTACGTAGGAAGGTGAGAGAAAAGGTATATTATGGTTTTCATATAAAGACAGTTGAAGGAGAAATGGATGTTTGCCTGTGCAAATTGCATGCACCAAAAGCAAAGTCCGATATTCAGCAGTCTTCAGGTGTGGTACGCAAGAATGCTATTGGTTGTGATGGGTCAAAGTGGAAATTTGACGATCTTAATGGAAATTGGCGTATACAAGACTTCCAAAAGAATTGGTGGCCTCCACAGCAACACTACCCTGCCATGGAAGATTCAGTAGCAACAGCTGGTTCAGCAGGCGAGGACACCAAGACTTGTCCTCGCGGTCACTGGAGGCCCGCGGAGGATGAAAAGCTCCGGCAACTTGTTGAACAATATGGTGCCCAGAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCCGATTACGGTGGTTTAACCAGCTTGATCCCAGAATTAACAGAAGGCCATTCACAGAAGAAGAAGAAGAAAGGCTACTTGCAGCTCACCGCATTCATGGGAACAAGTGGGCACTCATAGCCAGGCTTTTCCCAGGTCGTACTGATAACGCTGTGAAGAATCATTGGCATGTTATAATGGCACGAAAGCAAAGAGAGCAATCTAAGTTAAGTGGGAAGAGAATCTTCCAAGATGTTTATAATGATTCCAACACCTCCTCTTCTACTAATTTTCCCGAAAAGAGATTAAAATCTCAAGATTTATATAGCTCGAGAATTGGATTAGAGAATGCAAGATTCTTTGACTTTGGGAACCTTGACAAAGATAGGATAATTGGAGATTCTCCCTCCTGGAATTTTGCATCCGTGGCAACCTCATCACACTGTTCTCCTGTAGTGGAATCATTTAGAAAAGAAGGGAGAGATTACTTCAATTCTTGCTTCAACATTTACTTCTCAGAATCCTCAAAAAGTTCAGATAGATTTCTCTGCAGAATTTATCCTAATTCTTCATCATACGGCAGCATTCGTGGTTCCACCACATTCTCGCTACCAAACTACAGGAAGGTTGTTCCAAGTGCTTTTGGAGTCCTTGGTTCTGCTGACGATGGGAGGTTAAAGAGGGACTTAATGAGTTTCTGCGATAACTCATCCACATTTGCAAAGTTGAGGGCTTCTACGGAACAAGAGCAAGCAGATGAGCCCATTGAACACAAACAAGTTCCTTTCATTGATTTTCTTGGCGTGGGTGTCTCATCATCATAA 1278 0.428 MSNYGVGYDDENGGLLRLRRKVREKVYYGFHIKTVEGEMDVCLCKLHAPKAKSDIQQSSGVVRKNAIGCDGSKWKFDDLNGNWRIQDFQKNWWPPQQHYPAMEDSVATAGSAGEDTKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLSGKRIFQDVYNDSNTSSSTNFPEKRLKSQDLYSSRIGLENARFFDFGNLDKDRIIGDSPSWNFASVATSSHCSPVVESFRKEGRDYFNSCFNIYFSESSKSSDRFLCRIYPNSSSYGSIRGSTTFSLPNYRKVVPSAFGVLGSADDGRLKRDLMSFCDNSSTFAKLRASTEQEQADEPIEHKQVPFIDFLGVGVSSS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1250 425 Gene3D - 121 172 - -
Glsi10g1250 425 ProSiteProfiles Myb-like domain profile. 121 167 IPR001005 -
Glsi10g1250 425 SMART sant 172 220 IPR001005 -
Glsi10g1250 425 SMART sant 120 169 IPR001005 -
Glsi10g1250 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 168 222 IPR017930 -
Glsi10g1250 425 CDD SANT 124 165 IPR001005 -
Glsi10g1250 425 FunFam MYB transcription factor 174 246 - -
Glsi10g1250 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 167 IPR017930 -
Glsi10g1250 425 ProSiteProfiles Myb-like domain profile. 168 218 IPR001005 -
Glsi10g1250 425 PANTHER MYB PROTEIN-RELATED 121 247 - -
Glsi10g1250 425 CDD SANT 184 215 IPR001005 -
Glsi10g1250 425 Pfam Myb-like DNA-binding domain 124 184 - -
Glsi10g1250 425 FunFam MYB transcription factor 121 172 - -
Glsi10g1250 425 Gene3D - 175 235 - -
Glsi10g1250 425 SUPERFAMILY Homeodomain-like 120 214 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1250 Glsi-ChrGlsi10 8443826 8449713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1250 119 310 MYB Transcription Factor Family AT1G17950 52.093 1.23e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi10g1250 Myb_DNA-bind_6 3.4e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1037 08 7623237 7629241 Glsi10g1250 10 8443826 8449713 CCT
Glsi10g1250 10 8443826 8449713 Glsi10g1250 10 8443826 8449713 ECH