LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g1241	ATGACTTCTGTCGATAGAGAAATTTGGACAGTGGAAGACGAAGCTTCTACCCTGGAATCCATAGACAATCTGTCTATCCCTACTCCACAGTCTTATGTAGTCATTGCATGCGATGCCACTAAAGATCACAGTGAAAACGAGATCAAGTTCATAATTGATCACGTTCGAAGTACGGGTGGCATTCTCAAGGCAGGTGACAAATTGCTTGTGCTCGGCGTCTTACATAAGCTGCTTCACCCCATGGGATACCAGACGTTAGCACACCCCGATTCTTTTGCTGGCACAAACTTTCGTGCTATGGAAGATGAAGTTAGGAAGAAAGTGGATGCATATGCAAGCATGCTTTTGCCAAGTCATGAATATTGTGAAAATGAAGGGGTTAGCATCGAAGTTAAAGTCATTGCGGGTTTTCCAGTTAGACAGGTTATTTTACAAGAGGTTACATACTATAATGCAGCTTGGATAATACTTGATAGGCATCTTCGAAGAGACCTGAGATCTTATTTTAACAAGATACCGTGTAAGGTTGCGTTGGTTAAAGATGATTTCTCTGTGGAGGCCTTGAGATCTCATCATTCAGGGGAAACAGATGTCTCAGAACACAAGCCTGTCTATTCTTTGTCCAATATTGTTTCACTGTCAGATTGTCGCAATATTGAAGACATCGAGCATTCTATCATCTCTTGCAGAAGTTATCCCTCATCCATGGCCTCTTCTGATAGCGCTGATTTGTTTAAGAGCAACACGAAGCACTCATATGCTAATAGGTCATCAGATTTTGGATCTTCTTCTAAGCAAGAAAAACCAGGCCTCTCTGGAAGGATTCAACAGTCAGTTACATCTCAGATTGTCCAAAACCAAAACAAATATGGCCTTCTTCCAAAATATTCAGATGCACCCATTCTTTGTGCTGGTTGTGGGACAAGGACTGAATTGTATACAAAGGATTCAATGCAGTTCAGCTATTCTGACATACAGATTGCAACAAATTATTTTTCAGAAGATAACTTACTAGGTGAAGGTGGATATGGGCATGTATACAAGGGTGTGCTTAGAGATGGGCAGCAAATTGCTGCCAAGGTGAGAAAAGAAGAAAGTAGACAAGGGTTTTCTGAGTTCCACTCTGAGATTTATGTCTTAAGTTTTGCTCGACACAAGAATATAGTGATGTTGTTGGGTTACTATTGCAAGAAAAGGCAAAACATTCTGGTGTATGAATATATTTGCAATAAGTCTCTTCACTGGCATTTATATGATAAAAACGCAAAAGTTCTAGAATGGCACCAAAGATATGCCATTGCCATTGGAATTGCAAAGGGATTGCGTTTCCTACATGAGGAATGCCGTGGAGGTCCTATTATTCATCGAGATATGCGACCAAGCAATATACTTCTCACTCATGACTTTGTTCCCTTGTTAGGTGATTTTGGCCTTGCCAAATGGAAGACAGGTGATGAGACTCTGCAAACAAGGATAATGGGGACATTGGGGTACCTTGCTCCTGAATATGCGGAAGATGGCATTGTTTCTGTGCGGACAGATGTGTATGCTTATGGCATTGTTCTATTACAATTGATATCAGGACGCAAGGTGGTCGATTCCAATAATCCAGAACAACTCTCTCTCCGACAATGGGCTGAGCCATTGATTGAGAAGGTGGCTTTAAATGAACTCGTTGACACTTGTCTCGGGGAATCATATGAGAAATATCAATTATACCTCATGGCAAAAGCAGCATACTTCTGCATACAAAGAAATCCCGAAATGCGACCTTTAATGGGAGAGGAGCCTTCCCTTCAGATATCCACCAATCTTGCTGATAACAAAAAATTATTTAATGGGTTCTCCCACCAAGCATTCCATTTGTTCATATTTTTCAAACGCAGAGAGAAGAGGCAAAGAGAGAGAGAGAGAGAGATATTGAGTGGTATTCCAACGTCGAAAGCAAAGATACAAAGCAACTGTTCTTTTTCATCTAAGCTCACAGCAGTACTATGCAATGTAGAATCTTGA	2013	0.4088	MTSVDREIWTVEDEASTLESIDNLSIPTPQSYVVIACDATKDHSENEIKFIIDHVRSTGGILKAGDKLLVLGVLHKLLHPMGYQTLAHPDSFAGTNFRAMEDEVRKKVDAYASMLLPSHEYCENEGVSIEVKVIAGFPVRQVILQEVTYYNAAWIILDRHLRRDLRSYFNKIPCKVALVKDDFSVEALRSHHSGETDVSEHKPVYSLSNIVSLSDCRNIEDIEHSIISCRSYPSSMASSDSADLFKSNTKHSYANRSSDFGSSSKQEKPGLSGRIQQSVTSQIVQNQNKYGLLPKYSDAPILCAGCGTRTELYTKDSMQFSYSDIQIATNYFSEDNLLGEGGYGHVYKGVLRDGQQIAAKVRKEESRQGFSEFHSEIYVLSFARHKNIVMLLGYYCKKRQNILVYEYICNKSLHWHLYDKNAKVLEWHQRYAIAIGIAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPLLGDFGLAKWKTGDETLQTRIMGTLGYLAPEYAEDGIVSVRTDVYAYGIVLLQLISGRKVVDSNNPEQLSLRQWAEPLIEKVALNELVDTCLGESYEKYQLYLMAKAAYFCIQRNPEMRPLMGEEPSLQISTNLADNKKLFNGFSHQAFHLFIFFKRREKRQREREREILSGIPTSKAKIQSNCSFSSKLTAVLCNVES	670

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g1241	670	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	64	183	-	-
	Glsi10g1241	670	SUPERFAMILY	Protein kinase-like (PK-like)	316	595	IPR011009	-
	Glsi10g1241	670	FunFam	Os07g0541700 protein	408	495	-	-
	Glsi10g1241	670	Pfam	Protein kinase domain	333	544	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g1241	670	Gene3D	Transferase(Phosphotransferase) domain 1	409	610	-	-
	Glsi10g1241	670	CDD	STKc_IRAK	338	595	-	-
	Glsi10g1241	670	Gene3D	Phosphorylase Kinase; domain 1	304	407	-	-
	Glsi10g1241	670	MobiDBLite	consensus disorder prediction	254	277	-	-
	Glsi10g1241	670	ProSitePatterns	Protein kinases ATP-binding region signature.	338	360	IPR017441	GO:0005524
	Glsi10g1241	670	PANTHER	OS01G0750732 PROTEIN	219	596	-	-
	Glsi10g1241	670	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	453	465	IPR008266	GO:0004672\|GO:0006468
	Glsi10g1241	670	Gene3D	HUPs	29	180	IPR014729	-
	Glsi10g1241	670	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	304	407	-	-
	Glsi10g1241	670	ProSiteProfiles	Protein kinase domain profile.	332	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g1241	Glsi-ChrGlsi10	8392329	8404760	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g1241	320	595	Trihelix Transcription Factor Family	AT5G38560	44.014	3.11e-73	248

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-2	Glsi10g1241		Pkinase	1.1e-39	CL0016