Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1228 ATGGAAACCGAGGATGGAACAAGCAATGGCAAAAACAAAGAATGTGCTGGAGGGACTCATTGTTTAAAAAGCGAAGCCATAAATAATAAGGTGCCTATTGCAGATGGGAATGATGTCGCTGAAGGGGACTCTGGTGGGGTTGAATGTATTCGAACTTACAAGAGGCGTAAGCATGTGAAGTTCAATTCGGAAAGCAAGGTTCAAGAACATTGCAGAGCAAACATGGAAGCTACAAGTCATTTAGCAGACCAGGCTGGGAAGGAACTGCCTGATGTAGTTGTAGGCGATATTTTGTACAAGCAATTCTGTCTTCCCGTCAATGGCTCAGATGATAATTCACTTGGACATTGGGGAAATGTTGTACTAAAGGATTTGTATCAGTCACTAGGTGATGATAAAAGTGGCATGGAGAGGTGCATAAGGGAAGCACTTATACATCACCCTAAAATTAGTTGTGCCACTACAGTTAAGAAATCTCGTAAAATTGACAAAGATGGGCAAGAACGCTCTTTGCAATTTGGGTGGATGTCTCGTAGATTACAGAATGAAGCTAATGCGCATGTAGATGTCTTGTGTAATGGATGTTCTAGCGAATCAGATGGCAACAATGTGACCAAGATGTGTCAGCATGTGCTCTGTAATATCTTAGCCTCTGAAAATTTCAGTTCATTATGTAAGGTGCTAATTGAAAATTTTCAAGGAATGAAGCCTGAAAGTGTACTTGACTTTAGTGTCATAAACTCAAGGATGAAGGAGCGAGCTTATGAACATTCACCTAAACTTTTCTTGTCAGATATTCAACAGATATGGAGAAAGCTTCAAGACACTGGTAATAAGATTGTTTCTCTTGCCAAGAGCCTCTCCAACTTGTCAAGAACTTCCTACTGTGAGCAGTTATGTAACTGGGAATCTGACTCTCACATGAAACCAGAGCAGATAGAAGATCACAGTGGTATGTATAAAATTTGTACTTGCAGTCGTTGTGGAGACAAGGCAGATGGGATAGACTGTTTGGTTTGTGATTTATGTGAGGAGATGTACCATATCTCCTGTATTGAGCCAGCTGTGAAAGTGATACCCCACAAAAGCTGGTATTGTACCAATTGCACTGCTAGTGGAATTCGATCTCCACATGAGAATTGTGTGGTATGTGAGAGGTCGAATTTCTCAAAGACTCTGAACAACATTGCTGGTGATGAAAGCTTACATAAAGACGAGGGAATACGTAATGAATTGGAAGAGAATTCAAATTGTACCTATGATGGGGTTCAAGTGTCCAGAGGTGGGAAAAACAACTCATTTTGCAAAATTTGTGGTAATGAAGTGGATGGTGATCATAAGAAAATTTGTGGCCACTCCTTATGCCCCAATAAATTCTACCATGTAAGGTGTTTGACAAGTAAGCAGTTAAAGTCATATGGTCCCTGTTGGTTCTGCCCTTCTTGTTTATGCCAATTTTGCCTCACTGATAAAGATGATGATCAGATTGTTCTTTGTGATGGCTGTGATCATGCATACCACATCTATTGTATGCAACCTCCACGAACTTCTATACCAAAAAGGAAATGGTTCTGCAGAAAGTGTGATGGAGGGATCCAAGCCATACGCCAGGCAAAAAAGGCATATGAAAGTAAAAAGCTCAGAAATATAAGTCAAAATGGTTCAAAGCCAACTGGAAATTTTGAAAAGGTATGGAATATTGCATGTGGACGGGAATTGGAGAAAGGCGAAGGAATGGACATGCTTTTAACTGCTGCCAAAACTCTGAATAATGAAGATATGCTTTTATCTGCAGCCAATGCTCTGGATTCTGGAGGCAAATTTTGA 1827 0.4034 METEDGTSNGKNKECAGGTHCLKSEAINNKVPIADGNDVAEGDSGGVECIRTYKRRKHVKFNSESKVQEHCRANMEATSHLADQAGKELPDVVVGDILYKQFCLPVNGSDDNSLGHWGNVVLKDLYQSLGDDKSGMERCIREALIHHPKISCATTVKKSRKIDKDGQERSLQFGWMSRRLQNEANAHVDVLCNGCSSESDGNNVTKMCQHVLCNILASENFSSLCKVLIENFQGMKPESVLDFSVINSRMKERAYEHSPKLFLSDIQQIWRKLQDTGNKIVSLAKSLSNLSRTSYCEQLCNWESDSHMKPEQIEDHSGMYKICTCSRCGDKADGIDCLVCDLCEEMYHISCIEPAVKVIPHKSWYCTNCTASGIRSPHENCVVCERSNFSKTLNNIAGDESLHKDEGIRNELEENSNCTYDGVQVSRGGKNNSFCKICGNEVDGDHKKICGHSLCPNKFYHVRCLTSKQLKSYGPCWFCPSCLCQFCLTDKDDDQIVLCDGCDHAYHIYCMQPPRTSIPKRKWFCRKCDGGIQAIRQAKKAYESKKLRNISQNGSKPTGNFEKVWNIACGRELEKGEGMDMLLTAAKTLNNEDMLLSAANALDSGGKF 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1228 608 PANTHER OS02G0192300 PROTEIN 249 379 - -
Glsi10g1228 608 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 427 534 IPR013083 -
Glsi10g1228 608 Gene3D - 221 372 - -
Glsi10g1228 608 Pfam PHD-finger 484 529 IPR019787 -
Glsi10g1228 608 SUPERFAMILY FYVE/PHD zinc finger 316 372 IPR011011 -
Glsi10g1228 608 ProSiteProfiles Zinc finger PHD-type profile. 322 372 IPR019787 -
Glsi10g1228 608 SMART PHD_3 486 529 IPR001965 -
Glsi10g1228 608 SMART PHD_3 434 483 IPR001965 -
Glsi10g1228 608 SMART PHD_3 324 370 IPR001965 -
Glsi10g1228 608 FunFam PHD finger protein EHD3 isoform A 226 373 - -
Glsi10g1228 608 ProSiteProfiles Zinc finger PHD-type profile. 481 531 IPR019787 -
Glsi10g1228 608 SUPERFAMILY FYVE/PHD zinc finger 483 532 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1228 Glsi-ChrGlsi10 8278904 8286597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1228 483 547 C2H2 Transcription Factor Family AT3G01460 47.692 3.14e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi10g1228 PHD 5.6e-13 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1228 10 8278904 8286597 Glsi08g1076 08 7916149 7921763 CCT
Glsi10g1228 10 8278904 8286597 Glsi10g1228 10 8278904 8286597 ECH