Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1222 ATGCTGCAAGCGGGCCCAGCCGGAGAATCCCGCGACGGAACATCTGCTGGCCGAACGGTGGTCGTGGGAGTGAGGTTGGATTCTCCCAGCAGAGAGTTGCTCACCTGGGCTTTGGTCAAAGTCGCTCTGCCCGGTGATGTTGTGGTTGCTATTCATGTTCTTGGGAACGATGAAATTGTGAATCGAGACGGGAAGGCTACGCTTCTTTCGCTTGTAAAAGCATTTGACTCTGTTCTTGCTGTTTATGAAGGTTTCTGCAATTTAAAGCAGGTGGAGCTCAAGCTCAAAATTTGCAGAGGCTCTGATGTCCGGAAAATTTTAGTTCGAGAAGCAAATGCGTATTCTGCAACTCATATTATAGTGGGAACTGCCCATGGCCTTCGTAAAATTCGACCATCTACCTCCGTAGCTAAGTACTGTGCTAAGAAGTTATCCAAGGATTGCTGGGTTCTTGCTGTGAATAATGGAAAAGTTGTATTCAAAAGAGATGGCTCATCAGCAGCTCCCTCTGATTTACAAGGAATTGATCGTCATGGGAGAAATGGCTTGCTTGGATCAGTTCACCGCAAACTTAATCATAGTTCCAAAGTTCTAAATGATGACAATACGGGGATACATGACAAGGGTACTTGCAAAATTTCGGATAACAGCTTGGCTAAGGTCTTTCTTGATTCTACAGAAACCGTTCAGAAGCATAGCTGCTCAATTTGTGGCCCGACATCTGCATTGTCAACTACTTCTTCTGACCAATCTACAGAAAAATCATCGGATAATGGTGGTAGTGACAACTCCTTGGCTATAGTGCCTGCACAGACGTCTGAGGCAGTATCAAGCGCAACCAATTTGTCTTTCAAAAAACTACCTGAGCTGAAACCTGGTTGGCCACTACTGCACAGGACAATTTTATCAGACCGACAATCTCCTGACAGATCAATGGTGCGCCGGATCTCTGTGGTTCAGTGGGCAATGCAGTTGCCCTGTAGAAATCTTTCATATGCTGCAGATCATGATCACAAGCATAACAGTTGTGATCCAGGTCAATATCAATCTTTGGCTTTAGATAGCGAGAGTGGTGCTATTGTTCCAGTGGATGCTGAAGTAGGGACTGCTTCTTCACCTGACCACAATTCAAGAAACATTCCTAAAGAATTGGAGGGACTTCATGAGAAATACTCATCGACCTGCAGATTGTTCAAGTACCAAGAACTTGTGTCGGCAACATCAAATTTCTTGACTGAAAATTTGATTGGCAAAGGAGGAAGCAGTCAGGTTTACAGAGGCTGTCTTCCCGATGGCAAGGAACTTGCCGTTAAGATCTTAAAGCCTTCTGATGATGTTCTAAAGGAGTTTCTTTTGGAAATAGAAATTATCACAACCTTGCATCACAAAAATATTATTTCCCTCCTGGGATTCTGCTTTGAGGATGGAAATCTTCTTTTGGTGTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCACGGGAAAAAGAAAAATCCACTTGTGTTTGGTTGGACTGAGAGGTATAAGGTGGCAGTCGGTGTTGCTGAGGCTCTGGATTATCTGCACAATAAAGATGCTCCACCTGTGATCCATAGGGATGTAAAATCATCCAATGTATTATTGTCTGAGGACTTCGAACCCCAGCTCTCTGATTTTGGACTTGCTAAATGGGCATCAACCTCGTCATCACATATAACCTGCACAGACGTTGCTGGAACCTTTGGTTACTTGGCTCCTGAGTACTTCATGTATGGCAAAGTAAATGATAAAATTGATGTCTATGCATTTGGTGTCGTGCTCCTTGAGCTTCTTTCAGGAAGGAAGCCCATTAGTGGTGATTATCCTAAAGGTCAAGAGAGCCTCATCATGTGGGCAACTCCAATTCTGAATAGCGGAAAGGTGTCACAATTATTAGATCCAAGTTTGGGCGATACATATAATCAGGACCAGATGGAGAGGATGGTCTTGGCAGCCACGCTTTGTATCAGACGTGCCCCAAGAGCTAGGCCTCAAATGAGCCTTATTACAAAGCTCCTTCAAGGAGATGCCGATGTAATCAAGTGGGCAAAGTTAGAAGTTAATGCTTCTGAAGCATCGGAAATGCTTGATGACGAATCTTGTCCGCCTTCTAATCTACAGTCACATCTCAATCTGGCCCTTCTCGATGTGGAGGACGACTCACTCTCCATGTGCAGTATTGATCAGAATGTCTCGTTGGAGGACTACTTGAGAGGCAGGTGGAGCCGCTCATCAAGCTTTGACTGA 2271 0.4447 MLQAGPAGESRDGTSAGRTVVVGVRLDSPSRELLTWALVKVALPGDVVVAIHVLGNDEIVNRDGKATLLSLVKAFDSVLAVYEGFCNLKQVELKLKICRGSDVRKILVREANAYSATHIIVGTAHGLRKIRPSTSVAKYCAKKLSKDCWVLAVNNGKVVFKRDGSSAAPSDLQGIDRHGRNGLLGSVHRKLNHSSKVLNDDNTGIHDKGTCKISDNSLAKVFLDSTETVQKHSCSICGPTSALSTTSSDQSTEKSSDNGGSDNSLAIVPAQTSEAVSSATNLSFKKLPELKPGWPLLHRTILSDRQSPDRSMVRRISVVQWAMQLPCRNLSYAADHDHKHNSCDPGQYQSLALDSESGAIVPVDAEVGTASSPDHNSRNIPKELEGLHEKYSSTCRLFKYQELVSATSNFLTENLIGKGGSSQVYRGCLPDGKELAVKILKPSDDVLKEFLLEIEIITTLHHKNIISLLGFCFEDGNLLLVYDFLSRGSLEENLHGKKKNPLVFGWTERYKVAVGVAEALDYLHNKDAPPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISGDYPKGQESLIMWATPILNSGKVSQLLDPSLGDTYNQDQMERMVLAATLCIRRAPRARPQMSLITKLLQGDADVIKWAKLEVNASEASEMLDDESCPPSNLQSHLNLALLDVEDDSLSMCSIDQNVSLEDYLRGRWSRSSSFD 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1222 756 SMART serkin_6 410 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1222 756 CDD USP_Like 19 150 - -
Glsi10g1222 756 CDD STKc_IRAK 416 683 - -
Glsi10g1222 756 MobiDBLite consensus disorder prediction 237 265 - -
Glsi10g1222 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Glsi10g1222 756 Gene3D HUPs 17 155 IPR014729 -
Glsi10g1222 756 Gene3D Phosphorylase Kinase; domain 1 374 484 - -
Glsi10g1222 756 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 17 154 - -
Glsi10g1222 756 ProSitePatterns Protein kinases ATP-binding region signature. 416 438 IPR017441 GO:0005524
Glsi10g1222 756 FunFam Putative receptor-like serine/threonine-protein kinase 485 697 - -
Glsi10g1222 756 Pfam Protein kinase domain 413 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1222 756 ProSiteProfiles Protein kinase domain profile. 410 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1222 756 SUPERFAMILY Protein kinase-like (PK-like) 391 685 IPR011009 -
Glsi10g1222 756 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 379 484 - -
Glsi10g1222 756 PANTHER OS08G0249100 PROTEIN 186 695 IPR046958 -
Glsi10g1222 756 Gene3D Transferase(Phosphotransferase) domain 1 485 701 - -
Glsi10g1222 756 Pfam Universal stress protein family 18 150 IPR006016 -
Glsi10g1222 756 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1222 Glsi-ChrGlsi10 8226187 8229716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1222 398 687 Trihelix Transcription Factor Family AT1G70460 43.729 6.13e-78 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Glsi10g1222 Pkinase 4.9e-43 CL0016