Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1220 ATGGGCTCGTGTGGGAAATCGACTATATTAGATGATGCCTCAGGCGGGTCTGTTATTGATCAGCATTTATGCTCAGAGTTTCCAGCGCAGTCTGTTCCCGTGCAACGGTCCTGTTCAGAAGTAACTTGCAATGCGTTGGACTCTAATTTTGACCACTCCAATATGCTGGGGGGTTGTATGGATTTGCCTAGACAGGTCCTCCCTGGGTCTGCAAGCTTTATTGATGTTGCAGAGACGTTCAGAGATTCATTGGTGATGGCGAGTAAAACTGAAGAGGCTAATATGTTGCTATTCGAGAAAACCTTTGACAATAGTAGTCAGACTTGTTCGATGATGTGTTGTGGGAAAATTAAAGTTTCCGACCTGGAAAGTTTCAGGCTATGTCCAGAAGAAATACCTTATGACGAAGATGGCCATGAAATGCCATCGGAGTTCATATTGACAAGTGATTCACCTATTAGTTGTGTTCAAAGGCGTGGGCAGAAGGACGAGAACAGCAGCGTATTCTTTGTTGATTGCCACCATCAAAATGAGCAGGAGAATATTATGAGAAATGCAGAGCCCTTGTTGGAGTTTGCAGACAAAAGTGACTCCTTATGTGAGATTGAAGTGGATGCTTGCAAGCAGATAGCTCCTTCACATGGTAGTGAAGTGCCCTCAAATGTAATATATACTGCAGTAGAGAGCATAAGTGATCAGCTGCATGATCAGAAAAATCGTGAGGATCCTGATAGTCCTTGTGAAGATCTTGTTGATAAAGAAAGCATCATTGCTAAAGATGTCCAAATATCATCCTCATCAGGTTGCCTAAGGATCTTGGCGAGTTTGCCTGTAGCTGATTCACATCGCGAGGCTACCCAGTTGAAGCAGAGGATTGATAAGTCTGATATTGATTTTAATGCAGAAGATGTGAAGAAAGTTATGGAGCAAAACATTTATGTTATGAATGAAATAAATGTTGAAATGGAGAACGATATATTGCAAATAGATGATAATGCCAGTAAATTGAAGGACAGTTCCTCAGAAACAAATATCATGTGTACCTTGAGAAAAACATCTTCTCCTGGATTAGGTCTTTCCTCTGTTGTTTATATCAGGAATAACCCTTCAAAGGATGCTAATGGTTCTGTCAGTTATAGTACTGCTGTGGGCAATTCTGGACAGACAGATAGTAATGGAAAAGATATTATCAAAGTTGATTGTATTACTGAAAGCAAATGTCCTGACATTGTATCTTTGCCTTTTCGAAGGAATAGTCAAAGAAGTAAATCTGGTAATAAGACACTGACCAAAAGGGCTTCAAGAAACTGCAAGAACAAAGCCAGTGTGCCACTTCTAGGTGAGGATATGAAGGTGATTTTAGAGGCTGCTAGAAAGAAAAGAAGCTGTTCCTCCAAACCAGCTCGTTCTTCTAGCTGGGGATTGTTAGGGAACGTTAATAAATTTTTTGTACAGGATAATGAGCTTGGGGTCAACAAAGTTATATGTCAAGGATTGGGAAAGGCGAGAGGTACCTGTAAAAGTCGTAAGGCAAATAAGAATGGTACAATTTCTAGTACAGTGAGTTCAATGCAGAAATGCTGTGCTTCAACTACTCGTGTTCGTCTGAAGATCAAACTGGGGAAAGAAGTTGATTTAAGCTGCTCAAATGTCTTGGTTCCAGAGGTTTTGAATGGCTCAGGTTCTTTGGGGCCTGGCTTAGGCTCTCAGGAAGTAGCCAGCAATGTAGATAAACTTTCAGAAGAGATTGCCATGGGCAAGTTAGAATCTTTTAAAAACAACCTGGACAAGGATGCTCTTGTTGTGAATGGACAAATTGCAAATAACCATTTAGAAAGTACTACAACAGTGGAAAAGTCAGATGGGAATGCAGAGGAACTTTGTCTTAAGTTTCCTCCGGAGAGGATGGTTGAATTATTGAAAGATCCAGTGAATAATAAGGGTATGGATCCTGGAACTTCACCTGATTCAGAAGTTATCAATTCAATTCCTGAAGTCCAGGTTGGTGAAAGATATCAACAAGATGTGCATGATGCTATTTTAGGTTCTTCTAAAGAGTCTAATTCTCCTGTGGATGTTACTGGTAGCAAACGAGGGAGGAAGAAAGATAAGTTTACATCTTCAAGTAATTGTATTGTGGAAGATGGATCTCAGGGTCCACCAAGGAAAAGTAAAGCTAAGCACTCAAAGAATCGTGGACGTAAGAAGCATTTTAATGATGCGGTTTGCTCCGTAGATCTGCTTGCTTCCACTGATAAAAATGCTGCAAGCAACATAGTAAGCTGTAAAGAATTATCCACTGAACCATTGCCCCTTTCTGGAGAGATTAAACTTGGAGACTCCACTAAGATTATGAAAGTCGAAAGTAGCATGGAAGATCAGACAACTGGCAGCCCAGATGTTGACCATGAGCTTTCAGAGTCCCAGGGCATTGATAATGTTCTGACTTCTGCAAGATCTTTCAGGCATAAACTTCCTAAAAGTCTTAAATCTGATAGAGTCAGCAAGATCAAATCAAAAACTTCTCAATCAATGAGCAGGAAAAAAGCTGTTAGCAGACAAGAGGAGAAACAGCAGAAATCTATTAAAAAGAGTGAAGTTAAGGGAAAAAGTGTTTCTGGAAAAGTTATATGTGAAGTGGAAGGTTGCGCACATACAGCATCTAAGTGCAAGTTTTTTAATGATGCTACAGAAAATGATCTTGATGGAAATCGTAAGTTGGATGCTATTGCAAAAATTAATGCTGGTGATGACAAAGTATCCACAAATGTATCCAATTTGGACATGGTAGTGGGTGTTCGTTTGGAAGATCAACATCTATCACCACATAATGCATGGGTGCACTGTGATGATTGTCACAAGTGGCGGCGTATCCCAGTTGAGCTTGCAGACCTAATTGAAGAAACAAATTGTGCCTGGACCTGTAAGGACAGCAATGATAAAGCCTTCGCTGATTGCTCTATTCCCCAAGAAAAGTCTAATGCAGAGATCAATGCAGAGTTGGGACTATCAGATGCATCTGGCGAAGAAGATGCTTATGAAGACTGTAAAAATTATAAGGAATTGGAATATCGACGTCCGATGGTTTACCAGGAGTCAACTTTTGCCCTTATTTTTGCTAATGAGTTTCTGCATCGCAGCCGCAAAACTCAGACTATTGATGAGATGATGGTCTGCTATTGCAAACCACCTTCAGAAGGCCGGTCAGGTTGTAGGGATGAATGTCTAAATCGGATTCTCAACATTGAATGTGTTCAGGGAACCTGCCCATGTGGGGACCTTTGTTCAAATCAACAGTTCCAGCAACGCAAGTATGCCGGCCTGAAGTGGTTTAAATGTGGGAAAAAGGGTTATGGGCTGAAGGCACTTGAGGATATATCTGAAGGGCAGTTTCTTATTGAATATGTTGGAGAGGTGCTTGATGTGCATGCTTATGAGGCACGACAAAGAGATTACGCTTTGAAGGGTCATCGACATTTCTACTTCATGACTTTGAATGGCAGCGAGGTGATAGATGCCAGCGCAAAAGGAAACTTGGGACGTTTTATCAATCATAGTTGTGATCCTAATTGTCGTACAGAAAAGGTGAATACATTATCTACATCTGCTGTGTGGATGGTGAATGGTGAAATCTGTATTGGACTGTTTGCATTGAGGGATATTAAGCAGGATGAAGAGGTGACATTTGATTACAATTATGTAAGGGTTTTTGGCGCTGCTGCAAAAAAATGTTATTGTGGTTCACCTCTGTGTCGAGGTTATATAGGTGGTGATCTGCTTAATGCTGAAGTTATTGTTCAAGGTGATTCAGATGAAGAGTTTCCAGAACCAGTGATGCTTACTGAAGACAGTATACCTGGATCCAAAGTTGTTACACGTACTGATAGGCATATGTTAAAAAACAGTGACCTAATGGACAAGTCCACAAGTGTTATAGGGCCAGATAATATTCCAGAGAAAGAGAATTCTATGAACCCTAGCTCTGCTATTTACCAGTTGCACAGCCCATTGGAAGTGGAAGACTCTATGGGCAAGTTACCATCTTCAGTTCTTGTGGAAAAATCTTCGCAACAAATGGAGGATGTAACTAGCAAACCTGGGCTTGCTGTACAACAAGGATATGCAATGGAAGCTGAGCTTCCTGACAAAACTTCCTCCATTCAAAGATTAGAGACTTCTTCCACTACAACTGCCAGCAAAGTGTTATCAAATATCGATAAAAGTAATAGGGATTCCAACTCTGAAACAGTTGAAGACAGGTCTAGTTTTTCCAAATCACATCTTGTGAAGACTTCTCGGCTAAATTGTTCTGTTAAAAAGGGAAAGGTTCATGCTAATCCCTTAAATGGTCTCAAAGCTGAGGTGACCAACAGATTGCAGGTGTCATCAATTAAACTTAAAAAAGTACTGGACAGTTCTCCCAATTGCCGTTTTGAAGCAGGTTGTGTTGCTGATGTACACTTATTTGTCTTTGATTTTGGTCCTTGCTCCAATATTCCCTTACATTGGAGGTGTACTTTGACTTACCACCTTGGCATCTTCATAATAAATTTGGTTTTCCACCATCTTTTTCTGCAACAGGATGCCACCAAAGGCTACTTGAAGCTTCTGCTTCTCACTGTGGCATCAGGTGATAGGATTAATGGCGAAGCAATTCAAAGTGGTCGAGATCTTTCCATGATCCTTGATGCTCTCCTAAAAACAAAACCTAGAGCAGTGCTGAATGATATAATTAATAAAAATGGTTTACAGATGTTGCATAACATAATGAAGCAGTACAGAGGGGATTTCAAAAAAACTCCCATACTACGGAAGCTTCTTAAGGTCTTAGAGTACTTAGCAGAAAGGGAGGTATTGACGTTTGAACACATTAATGGCGGCCCCCCTTGTCGTGGAGTGGAGAGCTTTAGGGAGTCAATGCTGTCTTTGACAGAGCATGTGGACAAACAGGTCCATCAATCTGCTCGAAGCTTCCGAGACAGATGGATTCCTAGACCTGTAAGAAAACATGGTTATATGGACCGGGATGATTTTAGGGTGGAATTCCACAGGAATTTTAACTGCAATAGATTTTCAGCATCACACAACCATAGGCGTGAGCAGGATGTAAGACCCACAGAAGCAATAGATTGTGTCCAGCAGTCAAAGCTTGTAATAACTTCGGTAGATGCTGGTCCCCAGGGGGGCTGCCCTGCACTGTCTTTAGATGGTTGTAAAATTAATGGGACAAAAAGACGTAAGCGTAAAAGCAGATGGGATCAACCAGCAGAGACAAATTCAGATTCATCATATAATCCGTGTATGAAACAAAATATTGACTCTGGGCTGTTAATGCAAACTGATGCAGCTGTTAACTCTTTTGATGGAAGGCAGAACGTTAGTGAGGATTTTCCCCCTGGATTTTCATGCCCATTTCAACCACAATTGGGTTCGTTGAATGCTTCATCACACTCTGGTGATCTTGCTTTGCAAAATGTGGGCAATTCTGGGTGTCCCTCTGATGTAGTAATTGGGCATCCAAAGGAGAAATTTAATTCTCGCTTGTTTGTCTCGTACGGAATGCCATTGTCAGTTGTTCAGCAGTGTGGAACCCCTCATGCTGAAATTTCAGAGGGTTGGGTCACCGCTCCAGGAATGCCTTTCAACCCTTTTCCGCCACTGCCTCCCTATCCACGGGATAATAAAGACTGTCAACTTAATAATTCTACTTATGCAGGGACAGTAGATCAGCCTGCTGAAGTTCGGCAATGGGATACGAGTTATCCTGTTAGTTGTTACTCTGAGGATACGACTCCCAGCACAGTCGGTGCCAACTCTGTAGAAATTGACCTTTTAGATGAGGACAATAAACACCTTTGTAAGCGAATGAAGGGTTCCTCTTGTGATTTGGGAAGGAGGTACTTTAGGCAGCAAAAATGGAATAATTTAAAAATACATCGACCATGGTTCAGGAGGAATGCATGGGGATGTAATGGGAACGACACTAGTATAGGTGTAGGAGATGTACCAAACGAGTCAGAAGTTACATGTTCTTCGGAGGATCCGCGAGCAGAAGAGGAAAGAATGGCCACGAGCTGCAATGGATCTGACCGGAGATGGAAGCTGGTAGAGCTAATGGAAACTGGTAGAGATGGATAG 6138 0.4146 MGSCGKSTILDDASGGSVIDQHLCSEFPAQSVPVQRSCSEVTCNALDSNFDHSNMLGGCMDLPRQVLPGSASFIDVAETFRDSLVMASKTEEANMLLFEKTFDNSSQTCSMMCCGKIKVSDLESFRLCPEEIPYDEDGHEMPSEFILTSDSPISCVQRRGQKDENSSVFFVDCHHQNEQENIMRNAEPLLEFADKSDSLCEIEVDACKQIAPSHGSEVPSNVIYTAVESISDQLHDQKNREDPDSPCEDLVDKESIIAKDVQISSSSGCLRILASLPVADSHREATQLKQRIDKSDIDFNAEDVKKVMEQNIYVMNEINVEMENDILQIDDNASKLKDSSSETNIMCTLRKTSSPGLGLSSVVYIRNNPSKDANGSVSYSTAVGNSGQTDSNGKDIIKVDCITESKCPDIVSLPFRRNSQRSKSGNKTLTKRASRNCKNKASVPLLGEDMKVILEAARKKRSCSSKPARSSSWGLLGNVNKFFVQDNELGVNKVICQGLGKARGTCKSRKANKNGTISSTVSSMQKCCASTTRVRLKIKLGKEVDLSCSNVLVPEVLNGSGSLGPGLGSQEVASNVDKLSEEIAMGKLESFKNNLDKDALVVNGQIANNHLESTTTVEKSDGNAEELCLKFPPERMVELLKDPVNNKGMDPGTSPDSEVINSIPEVQVGERYQQDVHDAILGSSKESNSPVDVTGSKRGRKKDKFTSSSNCIVEDGSQGPPRKSKAKHSKNRGRKKHFNDAVCSVDLLASTDKNAASNIVSCKELSTEPLPLSGEIKLGDSTKIMKVESSMEDQTTGSPDVDHELSESQGIDNVLTSARSFRHKLPKSLKSDRVSKIKSKTSQSMSRKKAVSRQEEKQQKSIKKSEVKGKSVSGKVICEVEGCAHTASKCKFFNDATENDLDGNRKLDAIAKINAGDDKVSTNVSNLDMVVGVRLEDQHLSPHNAWVHCDDCHKWRRIPVELADLIEETNCAWTCKDSNDKAFADCSIPQEKSNAEINAELGLSDASGEEDAYEDCKNYKELEYRRPMVYQESTFALIFANEFLHRSRKTQTIDEMMVCYCKPPSEGRSGCRDECLNRILNIECVQGTCPCGDLCSNQQFQQRKYAGLKWFKCGKKGYGLKALEDISEGQFLIEYVGEVLDVHAYEARQRDYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKVNTLSTSAVWMVNGEICIGLFALRDIKQDEEVTFDYNYVRVFGAAAKKCYCGSPLCRGYIGGDLLNAEVIVQGDSDEEFPEPVMLTEDSIPGSKVVTRTDRHMLKNSDLMDKSTSVIGPDNIPEKENSMNPSSAIYQLHSPLEVEDSMGKLPSSVLVEKSSQQMEDVTSKPGLAVQQGYAMEAELPDKTSSIQRLETSSTTTASKVLSNIDKSNRDSNSETVEDRSSFSKSHLVKTSRLNCSVKKGKVHANPLNGLKAEVTNRLQVSSIKLKKVLDSSPNCRFEAGCVADVHLFVFDFGPCSNIPLHWRCTLTYHLGIFIINLVFHHLFLQQDATKGYLKLLLLTVASGDRINGEAIQSGRDLSMILDALLKTKPRAVLNDIINKNGLQMLHNIMKQYRGDFKKTPILRKLLKVLEYLAEREVLTFEHINGGPPCRGVESFRESMLSLTEHVDKQVHQSARSFRDRWIPRPVRKHGYMDRDDFRVEFHRNFNCNRFSASHNHRREQDVRPTEAIDCVQQSKLVITSVDAGPQGGCPALSLDGCKINGTKRRKRKSRWDQPAETNSDSSYNPCMKQNIDSGLLMQTDAAVNSFDGRQNVSEDFPPGFSCPFQPQLGSLNASSHSGDLALQNVGNSGCPSDVVIGHPKEKFNSRLFVSYGMPLSVVQQCGTPHAEISEGWVTAPGMPFNPFPPLPPYPRDNKDCQLNNSTYAGTVDQPAEVRQWDTSYPVSCYSEDTTPSTVGANSVEIDLLDEDNKHLCKRMKGSSCDLGRRYFRQQKWNNLKIHRPWFRRNAWGCNGNDTSIGVGDVPNESEVTCSSEDPRAEEERMATSCNGSDRRWKLVELMETGRDG 2045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1220 2045 Pfam SET domain 1117 1232 IPR001214 GO:0005515
Glsi10g1220 2045 ProSiteProfiles Zinc finger CW-type profile. 940 994 IPR011124 GO:0008270
Glsi10g1220 2045 CDD SET_SETD2 1105 1256 IPR044437 GO:0010452|GO:0046975
Glsi10g1220 2045 SMART set_7 1106 1238 IPR001214 GO:0005515
Glsi10g1220 2045 SMART shorttest3 1054 1105 IPR006560 GO:0005634|GO:0042054
Glsi10g1220 2045 FunFam Histone-lysine N-methyltransferase 938 999 - -
Glsi10g1220 2045 MobiDBLite consensus disorder prediction 1385 1410 - -
Glsi10g1220 2045 Gene3D - 935 999 - -
Glsi10g1220 2045 MobiDBLite consensus disorder prediction 2001 2024 - -
Glsi10g1220 2045 ProSiteProfiles AWS domain profile. 1054 1104 IPR006560 GO:0005634|GO:0042054
Glsi10g1220 2045 SUPERFAMILY SET domain 1045 1253 IPR046341 -
Glsi10g1220 2045 Gene3D SET domain 1001 1265 IPR046341 -
Glsi10g1220 2045 MobiDBLite consensus disorder prediction 680 735 - -
Glsi10g1220 2045 MobiDBLite consensus disorder prediction 849 867 - -
Glsi10g1220 2045 PANTHER SET DOMAIN PROTEINS 436 1758 - -
Glsi10g1220 2045 Pfam CW-type Zinc Finger 946 992 IPR011124 GO:0008270
Glsi10g1220 2045 SMART PostSET_3 1240 1256 IPR003616 -
Glsi10g1220 2045 ProSiteProfiles Post-SET domain profile. 1240 1256 IPR003616 -
Glsi10g1220 2045 Pfam AWS domain 1069 1103 IPR006560 GO:0005634|GO:0042054
Glsi10g1220 2045 MobiDBLite consensus disorder prediction 1744 1765 - -
Glsi10g1220 2045 MobiDBLite consensus disorder prediction 825 867 - -
Glsi10g1220 2045 MobiDBLite consensus disorder prediction 1380 1422 - -
Glsi10g1220 2045 FunFam Histone-lysine N-methyltransferase 1005 1270 - -
Glsi10g1220 2045 MobiDBLite consensus disorder prediction 680 694 - -
Glsi10g1220 2045 ProSiteProfiles SET domain profile. 1098 1232 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1220 Glsi-ChrGlsi10 8198642 8214977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1220 1089 1255 C2H2 Transcription Factor Family AT2G23740 33.889 1.08e-18 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi10g1220 SET 1.3e-18 No_clan