Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1200 ATGGCAGCAGCAGATCTACAGTTCCCACCAGGCTTCAGATTCCATCCAACGGATGAGGAGCTTGTTATGCACTATCTCTGCCGTAAATGTGCATCGCAGCCAATCGCCGTTCCTATCATCGCCGAAATCGACCTTTACAAGTACGATCCGTGGGACCTTCCGGGCATGGCTTTGTATGGGGAGAAAGAGTGGTACTTTTTCTCACCAAGGGACCGTAAATATCCGAACGGTTCGAGGCCGAACAGGGCGGCCGGGTGTGGCTACTGGAAGGCAACCGGAGCGGATAAGCCTATCGGACATCCGAAACCCGTTGGGATCAAGAAAGCTTTGGTGTTTTACTCGGGGAAAGCGCCCAAAGGGGAGAAAACCAATTGGATTATGCACGAGTATCGTCTCGCCGACGTGGATCGCTCTGCTCGCAAAAAGAACAGCTTAAGGCTAGATGACTGGGTGCTTTGCCGTATCTACAATAAGAAGGGCTCCATTGAGAAGCAAACAAGTGCTTTTAGCAGGAAAACTGAATGCTCAGAAATGGAGGACAAGAAACCGGAGAATTTGACGGGTGGCGGCGCACTTCCTCCACCGCCACCGCCACCGCAACCTCAAGCGCCGACTGCGGTGACTGATTTCATGTACTTTGACGCGTCGGATTCAATTCCGAAACTGCACACCGACTCGAGCTGCTCGGAGCACGTGGTGTCGCCGGAGTTCGCGAGCGAGGTTCAGAGCGAACCCAAGTGGAATGAGTGGGAGAACCACCTTGAGTTTCCATATAATTACGTGGATACCACTCTCAACAACAATAATGGCTTCGGGCCGCAGTTCCAGAGCTGTAGTCAGATGTCGCCGTTGCAGGATATGTTCATGTACCTGCCGAAGTCCTTCTGA 888 0.5259 MAAADLQFPPGFRFHPTDEELVMHYLCRKCASQPIAVPIIAEIDLYKYDPWDLPGMALYGEKEWYFFSPRDRKYPNGSRPNRAAGCGYWKATGADKPIGHPKPVGIKKALVFYSGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGSIEKQTSAFSRKTECSEMEDKKPENLTGGGALPPPPPPPQPQAPTAVTDFMYFDASDSIPKLHTDSSCSEHVVSPEFASEVQSEPKWNEWENHLEFPYNYVDTTLNNNNGFGPQFQSCSQMSPLQDMFMYLPKSF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1200 295 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Glsi10g1200 295 MobiDBLite consensus disorder prediction 166 204 - -
Glsi10g1200 295 Pfam No apical meristem (NAM) protein 9 132 IPR003441 GO:0003677|GO:0006355
Glsi10g1200 295 FunFam NAC transcription factor 17 162 - -
Glsi10g1200 295 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Glsi10g1200 295 PANTHER NAC TRANSCRIPTION FACTOR 56 8 214 - -
Glsi10g1200 295 MobiDBLite consensus disorder prediction 189 204 - -
Glsi10g1200 295 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1200 Glsi-ChrGlsi10 8097691 8099243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1200 6 295 NAC Transcription Factor Family AT1G01720 70.432 6.57e-146 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi10g1200 NAM 6.5e-39 No_clan