Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1198 ATGAGGAGGGCTAAAGTGGCGTTACCGCAAATGTCAAAGTCTCCCTCTCCTGAACCACAGCAGTCCATTTATTCTTCTTCTCGGCCTAGGGAAACTAATGGGGCCACAGAAATGGACGATCCAGAATCTACAATGGCTACAGTTGCTAATTTTGTTGAGCAGCTGCATGCCAACATGTCATCACCACTCGAGAAGGAACTTATCACAGCACGTTTGCTAGGTATTGCCAGGGCAAGAAAGGATGCTAGAACACTTATTGGTTCTCATGCTCAAGCAATGCCATTGTTCATAAGCATTCTCAGAAATGGAACCTCTCTGGCAAAAGTTAATGTTGCCGCTACTCTCAGTGTCCTGTGCAAAGATGAAGATCTGAGATTAAAAGTACTTCTTGGTGGTTGTATACCGCCGCTATTGTCACTTTTAAAGTCTGAATCTACAGAGGCCAGGAAAGCCACAGCTGAAGCAATATATGAAGTTTCTTCTGGTGGTCTTTCAGATGATCATGTTGGTATGAAAATTTTTGTTATGGAAGGTGTGGTTCCAACCTTATGGGATCAACTAAATCCAAAGAACAAGCAAGACAAAGTCGTGGAGGGATTTATTACGGGAGCATTAAGAAATTTGTGCGGCGATAAAGATGGCTACTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATTATTGTGGGTCTCTTGTCTTCAGACAATGCTGTTGCTCAGTCAAATGCAGCTTCTCTATTGGCACGTCTGATGCTGGCTTTTACTGATAGCATCCCCAAAGTTATAGAATCTGGAGCAGTCAAAGCTTTACTTCGGCTTGTTGGTCGGGAAAATGATGTTTCTGTGCGTGCAAGTGCTGCTGATGCTCTAGAGGCTCTTTCTTCAAAGTCAACTGGGGCTAAGAAAGCCATTGTTAGTGCAGATGGTGTTCCAATCCTTATTGGGGCTATAGTTGCTCCTTCTAAAGAGTGTATGCAAGGAAATGGCCAGGCTCTGCAGGTGCATGCAACTCGAGCTTTGGCAAATATTTGTGGTGGCATGTCTGCTTTAATACTATATCTTGGAGAACTATCACATTCTCCTCGCCTTGCTGCACCAGTTGGTGATATAATTGGGGCTCTTGCTTATACATTGATGGTCTTCGAGGAAAAACTTGATGTTGATGAGGAACCTTTTGATGCAACAAAGATAGAGGATATTCTAGTGACACTATTAAAGCCTCAAGACAACAAACTGATTCAAGAGCGTGTACTAGAGGCCATGGCTAGTCTATACGGAAACATCTGTCTCTCGAAGTGGCTCGATCATGCAGATTCAAAGAAGTTTCTGATTGGACTTATAACTATGGCCGCCGCTGATGTGCAAGAGTATTTGATACTTTCCTTGACAAGATTGTGCTGTGATAGGGTAGGAATATGGGAGGCCATAAACAAAAGAGAAGGCATCCAGTTACTTATATCAATGCTGGGACTATCCAGTGAGCAGCATCAAGAGTATGCAGTTCAGTTGCTAGCAATCTTAACTGACCACATTGATGACAGCAAGTGGGCAATCACTGCTGCTGGAGGGATTCCTCCGTTGGTGCAGTTATTAGAGACAGGATCACAGAAGGCAAGAGAGGAAGCTGCTCATGTTCTGTGGAATTTGTGCTGTCACAGTGAAGATATTCGTGCATGTGTGGAAAGTGCAGGGGCCATCCCAGCATTCTTATGGCTTTTAAAGAGTGGTGGATCAAGAGGACAAGAAGCTTCTGCCATGGCACTGAGTAAGCTTGTACGAGTAGCTGATTCTGCTACTGTTAATCAGTTATTAGTGTTGCTTCTAGGGGACTCTCCAAGCTCAAAGGCCCATATAATTCGAGTTTTAGGTCATGTACTTACTATGGCTTCACAAAACGACATCCTGCAAAAGGGTTCTGCAGCTAATAAGGGGTTGAGATCTCTAGTTCAGGTTCTCAATTCATCAAATGAGGAAACCCAGGAATATGCAGCTTCTGTCCTAGCTGATTTATTCAGCACAAGACAAGACATTTGTGATAGTCTTGCGACTGATGAGATTGTGCTTCCTTGCATGAAGCTTCTGACCAGCACAACTCAAGTTGTTGCAACTCAGTCAGCCCGAGCATTGAGTGCTCTGTCTCGTCCAACAAAGAGTAGATCTACAAATAAGAAGCCTTATATTGCAGAGGGGGACGTCAAACCACTAATTGAGTTGGCTAAAACTTCCTTTATTGATACTGCTGAAACTGCAGTTGGTGCACTGGCCAATCTTCTCTTTGATTCCTTCATTGCTACTGAAGCTCTGGCAGGAGATGTTGTTTCATCTATAACAAGAGTCCTGGCAGAAGGAACTTTGGAAGGTAAACAAAATGCATCGCGTGCACTTCATCAGTTACTGAAGCATTTTCCTGTAGGTGATGTTCTCAAGGGGACTACGCAGTGCCGTTTCACTGTACTTGCACTTATTGATTCCTTAAGTGCAATGAATATGGATGGAACAGATGCTGCAGATGCTTTAGAAGTAGTTGCACTGCTAGCCAGGACAAAACAGGGTGTCAACTTCACTTACCCTCCATGGTCTGCACTTGCTGAAATACCATCAAACTTAGAACCTCTTGTATGCTGCCTAGCTGAGGGGCCGCCCTTAGTACAAGACAAGGCAATTGAAATTCTGTCCAGACTTTGTGGAGATCAATCAGTTGTTCTAGGGGATTTGTTGGCTGCTAGGTCCAGATCGATTAGTTCATTGGCTAATAGAATAATGAACTCCTCCAGTTTAGAAGTAAAGGTTGGAGGGGCTGCTTTACTTATTTGTGCTGCAAAGGAGCATAAAGAGCTGTCAATAGATGCACTTGACATTTCTGGGTACCTAAAACCATTAATATATGCTTTAGTTGATATGATGAAGCAGAAATCTAGTTGTTCTTCATTAGAAATTGAAGTAAGAACTTCTAGAGATTTCATGGAGAGAAATGTATTTCAGGAAGTTGATCAATTTGATATTCCTGATCCAGCCACAGTTTTGGGCATTACTGTTGCCTTGTGGTTACTCTCAATTATTGCTTCTTTTCATATAAAGAACAAAATCACAATTACTGAAGCTGGGGGACTTGAGGCTCTCTCTGACAAGCTTGCAAGCCATACTTCCTATCCACAGGCAGAATTTGAGGATACTGAAGGAATATGGATCAGTGCCTTGCTTCTGGCCATTTTGTTTCAAGATGCAAATGTTGTTCTATCTCCTGCAACAATGCGCATTATACCTTCTCTCACTCATCTCCTGCGATCTGATGAAGTTATTGACAAATATTTTGCTGCCCAGGCTTTGGCTAGTCTTGTTTATAATGGTAATAAGGGAGTAAATCTTGCTGTTGCAAATTCAGGTGCTGTTGCTGGATTGATAACTATAATTGGTAATATCGAGTCAGATATGCCAAACCTTGTTGCTTTATCAGATGAATTTTCTTTGGTGCGAAACCCTGATCAAGTTGTTTTGGATCACCTTTTTGAAATTGAAGATGTGAGAGTGGGATCTACAGCACGGAAATCCATACCTCTCTTGGTGGATCTCTTGAGACCAATACCAGAAAGGCCCAGTGCTCCACCAGTTGCTGTTAAAATCTTGATACGCATTGCAGATGGAAGTGATACAAACAAATTAATGATGGCTGAAGCAGGCGCTTTGGAAGCTTTGACAAAATACCTGTCTTTGAGCCCTCAAGACTCAACTGAGGCCACTATCTCTGAGTTATTAAGAATATTATTTTGCAATTCTGACCTTATTAAACATGAAGCATCAGCAAGTTCCCTGAACCAACTCATAGCTGTTTTGCGTCTAGGATCAAGAAATGCTAGATATAGTGCAGCAAGAGCACTTCATGAACTTTTTGATGCTGAGATCATTAGAGACTCAGAATTAGCTAAACAGGCCATTCAGCCATTGGTTGACATGCTTACTACAACATCAGGTAGTGAACAGGAGGCTGCTCTTATTGCATTGATCAAATTAACTTCTGGAAATTTTTCAAAAGCATCACTTTTCACTGATGTGGAAGGGAACCCACTTCAGAGTTTATACCAAATATTGTCTTCTGCTTCATCCTTGGAACTGAAGAGCAAGGCTGCACAACTTTGCTTTGTTCTTTTTGGTAACAGGAAGATCAGAGCTGATCCACTTGCCCTAGAATGCATAGACCCCCTTATATCACTGATGCAGTCTGATTCTGGCACAGCAATAGAATCTGGGGTTTGTGCTTTTGAGAGATTGTTGGAAGATGAACAACATGTGGAGCTTGCAGCAGCCTATAACATTGTGGATCTCCTTGTCAGTTTGGTTTCAGGTACAAACTATCAGCTTATCGAGGCTACCATATCTGCTCTCATCAAATTGGGCAAAGACCGGACTCCATGCAAATTAGACATGGTCGAAGCTGGCATTCTTGATAATTGTCTCAAGTTACTCCAACTAGCACCTAGCTCATTGTGCTCTACAATTGCTGAACTATTTCGAATTCTAACAAATAGTAATGCAATTGCTAGAAATTCTGCTTCTGCAGAAATTGTAGAACCCCTTTTCCATGTTTTGCTCCGTCGAGATTTCAACTTGTGGGGACAGCATAGTGCCTTACAAGCACTTGTAAACATATTGGAGAAGCCACAAAGTCTTGCAACCTTAAAACTAACTCCTAGCCAAGTTATTGAGCCATTGATTTCTTTCCTGGAATCCCCATCCCAAGCTATTCAGCAGCTTGGCACAGAACTTCTATCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATTACAACAAAGAATGCTGTTGTTCCCCTTGTACAACTTGCAGGAATTGGAATACTAAACTTACAGCAAACAGCAATCAAAGCATTGGAGAAAATCTCCACAAGCTGGCCAAAGGCAGTCGCCGATGCAGGGGGGATTTTTGAGCTTGCAAAGGTTATTATTCAAGACGATCCTCAGCCACCGCAAGCACTATGGGAATCAGCTGCTTTGGTTCTTTCTAATGTATTATGTTCCAATGCTGATTATTATTTTAAAGTCCCTGTGGTGGTTCTTGTAAAACTTTTGCGCTCAACACTTGAGAGCACAATTAGTGTAGCTCTTAATGGCCTAATAGTTCATGAAAGAAGTGATGCTTCAAGTGCTGAACAGATGATGGAAGCTGAAGCTATAGATGCTCTGTTAGACCTTTTAAGATCTCATCAATGTGAAGAAGCATGTGGCAGATTACTTGAAGCTTTATTTAACAATGTGAAAATACGGGAGATGAAGGCATCTAAGTATGCAATAGCACCTTTATCTCAGTATCTGTTGGATCCACAGACCAGATCACAGTCTGGCAAGCTTCTTGCTGCTCTAGCTCTGGGAGATCTTTCCCAGCATGAAGGACATGCTAGAGCCAGTGATTCTGTTTCCGCATGTCGAGCATTGATAAGTTTACTTGAGGATCAGCCAACCGAAGAAATGAAGACGGTTGCCATTTGTGCATTACAAAACTTTGTCATGAACAGCAGGACTAATAGGCGAGCTGTTGCTGAAGCTGGTGGTATACTGGTGATTCAGGAATTGCTACTGTCTCCAAATCCAGAAGTTGCTGGACAAGCAGCATTACTGATCAAATTTTTGTTTTCTACTCACACACTGCAAGAATATGTGTCAAATGAACTGATCAGATCTCTGACAGCTTCACTGGAGAGAGAGTTGTGGTCAACTGCCACAATCAATGAAGAGGTTTTGAAAACACTGCATGTCATATTCATGAACTTCCCGAAGCTTCACATATCTGAAGCAGCAACTCTTTGCATTCCTCATTTGGTAGGGGCACTCAAATCTGGTAGTGAAGTGGCTCAGGACTCCGTACTAGACACCCTATGCTTGCTAAGACATTCTTGGTCAACCATGCCAATAGATATAGCAAAGTCGCAGGCTATGATTGCTGCTGAAGCCATTCCCATCTTGCAAATGCTCATGAAAACCTGTCCTCCTAGTTTTCATGAGAGAGCAGATAGTCTTCTGCATTGCTTACCAGGTTGTTTGACTGTCACTATTAAGCGTGGAAACAACCTCAAGCAAGCAATGGGAAGCACGAATGCATTTTGCCGGTTGACACTAGGCAATGGCCCTCCCAAACAAACCAAGGTTGTGAGTCACAGTATTTCTCCAGAATGGAAAGAAGGATTCACATGGGCATTTGATGTTCCTCCGAAGGGCCAAAAGCTCTATATCATATGCAAAAGCAAGAATACTTTTGGGAAGACAACTCTGGGAAGAGTGACTATCCAAATTGATAAAGTCGTAAACGAAGGAGTTTACAGTGGAATATTCAGTCTAAATCATGACAGAAACAAAGATGGCTCGTCCCGAACTCTTGAAATTGAGATTATCTGGTCCAACGGGATATCCGATGAAGACATATGA 6435 0.4236 MRRAKVALPQMSKSPSPEPQQSIYSSSRPRETNGATEMDDPESTMATVANFVEQLHANMSSPLEKELITARLLGIARARKDARTLIGSHAQAMPLFISILRNGTSLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTEARKATAEAIYEVSSGGLSDDHVGMKIFVMEGVVPTLWDQLNPKNKQDKVVEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNAVAQSNAASLLARLMLAFTDSIPKVIESGAVKALLRLVGRENDVSVRASAADALEALSSKSTGAKKAIVSADGVPILIGAIVAPSKECMQGNGQALQVHATRALANICGGMSALILYLGELSHSPRLAAPVGDIIGALAYTLMVFEEKLDVDEEPFDATKIEDILVTLLKPQDNKLIQERVLEAMASLYGNICLSKWLDHADSKKFLIGLITMAAADVQEYLILSLTRLCCDRVGIWEAINKREGIQLLISMLGLSSEQHQEYAVQLLAILTDHIDDSKWAITAAGGIPPLVQLLETGSQKAREEAAHVLWNLCCHSEDIRACVESAGAIPAFLWLLKSGGSRGQEASAMALSKLVRVADSATVNQLLVLLLGDSPSSKAHIIRVLGHVLTMASQNDILQKGSAANKGLRSLVQVLNSSNEETQEYAASVLADLFSTRQDICDSLATDEIVLPCMKLLTSTTQVVATQSARALSALSRPTKSRSTNKKPYIAEGDVKPLIELAKTSFIDTAETAVGALANLLFDSFIATEALAGDVVSSITRVLAEGTLEGKQNASRALHQLLKHFPVGDVLKGTTQCRFTVLALIDSLSAMNMDGTDAADALEVVALLARTKQGVNFTYPPWSALAEIPSNLEPLVCCLAEGPPLVQDKAIEILSRLCGDQSVVLGDLLAARSRSISSLANRIMNSSSLEVKVGGAALLICAAKEHKELSIDALDISGYLKPLIYALVDMMKQKSSCSSLEIEVRTSRDFMERNVFQEVDQFDIPDPATVLGITVALWLLSIIASFHIKNKITITEAGGLEALSDKLASHTSYPQAEFEDTEGIWISALLLAILFQDANVVLSPATMRIIPSLTHLLRSDEVIDKYFAAQALASLVYNGNKGVNLAVANSGAVAGLITIIGNIESDMPNLVALSDEFSLVRNPDQVVLDHLFEIEDVRVGSTARKSIPLLVDLLRPIPERPSAPPVAVKILIRIADGSDTNKLMMAEAGALEALTKYLSLSPQDSTEATISELLRILFCNSDLIKHEASASSLNQLIAVLRLGSRNARYSAARALHELFDAEIIRDSELAKQAIQPLVDMLTTTSGSEQEAALIALIKLTSGNFSKASLFTDVEGNPLQSLYQILSSASSLELKSKAAQLCFVLFGNRKIRADPLALECIDPLISLMQSDSGTAIESGVCAFERLLEDEQHVELAAAYNIVDLLVSLVSGTNYQLIEATISALIKLGKDRTPCKLDMVEAGILDNCLKLLQLAPSSLCSTIAELFRILTNSNAIARNSASAEIVEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQDDPQPPQALWESAALVLSNVLCSNADYYFKVPVVVLVKLLRSTLESTISVALNGLIVHERSDASSAEQMMEAEAIDALLDLLRSHQCEEACGRLLEALFNNVKIREMKASKYAIAPLSQYLLDPQTRSQSGKLLAALALGDLSQHEGHARASDSVSACRALISLLEDQPTEEMKTVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNPEVAGQAALLIKFLFSTHTLQEYVSNELIRSLTASLERELWSTATINEEVLKTLHVIFMNFPKLHISEAATLCIPHLVGALKSGSEVAQDSVLDTLCLLRHSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPGCLTVTIKRGNNLKQAMGSTNAFCRLTLGNGPPKQTKVVSHSISPEWKEGFTWAFDVPPKGQKLYIICKSKNTFGKTTLGRVTIQIDKVVNEGVYSGIFSLNHDRNKDGSSRTLEIEIIWSNGISDEDI 2144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1198 2144 MobiDBLite consensus disorder prediction 1 42 - -
Glsi10g1198 2144 Gene3D - 866 1160 IPR011989 -
Glsi10g1198 2144 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 20 2137 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Glsi10g1198 2144 MobiDBLite consensus disorder prediction 13 32 - -
Glsi10g1198 2144 Gene3D - 439 579 IPR011989 -
Glsi10g1198 2144 SMART C2_3c 2017 2113 IPR000008 -
Glsi10g1198 2144 Gene3D C2 domain 2017 2141 IPR035892 -
Glsi10g1198 2144 SMART arm_5 211 252 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 166 210 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 760 800 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 1297 1338 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 297 345 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 553 593 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 254 295 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 467 509 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 719 759 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 1425 1465 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 1467 1507 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 1717 1758 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 632 672 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 121 161 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 1215 1255 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 511 551 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 1843 1883 IPR000225 GO:0005515
Glsi10g1198 2144 SMART arm_5 1552 1593 IPR000225 GO:0005515
Glsi10g1198 2144 SUPERFAMILY ARM repeat 869 1143 IPR016024 -
Glsi10g1198 2144 SUPERFAMILY ARM repeat 1185 1551 IPR016024 -
Glsi10g1198 2144 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2015 2120 IPR035892 -
Glsi10g1198 2144 Gene3D - 168 433 IPR011989 -
Glsi10g1198 2144 Gene3D - 1175 1352 IPR011989 -
Glsi10g1198 2144 Gene3D - 1353 1615 IPR011989 -
Glsi10g1198 2144 Pfam Armadillo/beta-catenin-like repeat 515 550 IPR000225 GO:0005515
Glsi10g1198 2144 SUPERFAMILY ARM repeat 1620 2014 IPR016024 -
Glsi10g1198 2144 SUPERFAMILY ARM repeat 81 318 IPR016024 -
Glsi10g1198 2144 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 522 564 IPR000225 GO:0005515
Glsi10g1198 2144 Gene3D - 599 843 IPR011989 -
Glsi10g1198 2144 Gene3D - 42 167 IPR011989 -
Glsi10g1198 2144 Gene3D - 1619 2016 IPR011989 -
Glsi10g1198 2144 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 265 309 IPR000225 GO:0005515
Glsi10g1198 2144 Pfam C2 domain 2017 2116 IPR000008 -
Glsi10g1198 2144 SUPERFAMILY ARM repeat 390 1115 IPR016024 -
Glsi10g1198 2144 CDD C2 2018 2108 - -
Glsi10g1198 2144 ProSiteProfiles C2 domain profile. 1997 2114 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1198 Glsi-ChrGlsi10 8079054 8087792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1198 391 652 U-box Gene Family AT3G46510 27.178 7.45e-12 68.9