Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1197 ATGGATGTGAAAAGCAAGGGAATCGCATTGACCCTCTTTTTCTTTTGGGGATTGTCAGCTATTTTCCCTCTCTCTTTCTCAGCAGCCAATCAACTCCGTAACATAAAAAAGCCGGCCCAACCAACTTCTGGTAATCGCCGTAGCTCCTCGGCTGTTTTCCAGGTTCAAGGAAATGTATATCCCCTCGGGTATTACTCAGCCTCCCTTAACATTGGCAATCCCCCCAAGCTTTATGACTTTGACATTGACTCAGGTAGTGACCTCACTTGGGTACAGTGTGATGCACCGTGTAAAGGTTGCACCAAGCCTCGCGATCAACTTTATAAACCCAACAACAATCTTGTGCGGTGTGTAGACCAGTTGTGTGCAGCAGTCCAATCATCAACAAGCCATCACTGTAGTGCCCCAAATGAGCAGTGCGACTATGAGGTTGAGTATGCAGACCATGGATCATCTCTGGGTGTGTTAGTCCAAGACTACATTCCCCTTCGATTCACCAATGGCTCTGTCCTACGTCCTAAGGTAGCTTTCGGGTGTGGATATGATCAAAAGTATTCTGGTCCAACCTCTCCACCTTCTACAGCCGGAGTCCTAGGCCTTGGCAGTGGCAAGGCAAGCATTCTGTCCCAGCTTAGTTCTCTGGGTCTGATCCGCAATGTGGTGGGCCACTGCCTAAGTGCGCGAGGGGGAGGATTTCTATTTTTTGGAAATGATCTCATTCCCTCATCTGGAATTTCTTGGACGCCAATGTTGCCTAGTTCCTCAGTAAAACACTACATCTCAGGACCAGCGGATCTGTTATTCAATGCAAAGCCTACTACTGTTAAGGGTCTTCAAGTTATCTTTGACAGTGGGAGCTCCTACACATACTTCAATTCCCAAACTTACCAAGCCATTGTTAATATGATACTTGATGATTTAAAGGGAAAGCAATTGACAAGAGCAGCTGAAGATCCATCCCTTCCAATTTGCTGGAAGGGTGCAAAGCCCTTCAAATCTTTACGTGATGTCAGCAACTTTTTTAAGCCCCTGGCACTGAGCTTCACAAAAATAAAGAATTTGCAGCTGCAACTACCACCACCAGCTTATCTAATAGTCACCAAACATGGCAATGTCTGCTTGGGGATTCTAAACGGCACTGGAGTGGGACTAGGAAATATTAATATAATTGGAGACATCTTTTTACAAGATAAAATGGTGATTTATGACAACGAGAAAAAGCAGATTGGGTGGGTTTCTGCCAATTGTGATAGGCGTCCCAAATATAAACAATCTACCACGAACAAAATGACGGACACAATCTCATTGTCACCGATGGAGATTGACAACGATAACAACAATTTCTCTGCCATAACTGACAAGGGCAAAAGGGTGGTCGCCGCCGGCAAGGCCACACTGTGGGTGGAAAAGTACCGCCCTCAGTCCCTCGACGACGTCGCTGCTCATCGCGACATTGTTGATACCATTGACAGGCTGACCACTGAGAACAGATTACCCCATCTTCTTTTGTATGGCCCTCCTGGAACGGGCAAAACATCGACCATTCTTGCAGTGGCACGCAAACTATATGGAGTACAATCCCACAATATGATCTTGGAGCTCAATGCATCAGATGATAGGGGAATTGATGTTGTACGCCAACAAATCCAAGACTTTGCTAGCACTCAGAGCTTCTCATTTGGTGTCAAGTCCTCTGTAAAGCTGGTCTTGTTAGATGAGGCAGATGCCATGACAAAAGATGCTCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAATACTAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATTCCAGCACTACAATCTAGATGCACTAGGTTTCGGTTTGCCCCTCTTGATGTTGTTCATGTCTCTGAAAGACTGAAACATGTTATCAAATCTGAAGGGCTTGATGTTACAGACAGCGGCTTAGCAGCACTTGTTTGTCTTAGCAATGGTGACATGAGGAAGGCTTTGAACATTTTGCAGTCAACACATATGGCTTCTCAGCAGATAACAGAAGAAGCTGTTTACCTGTGCACTGGAAATCCGTTGCCCAAAGACATTGAACAAATATCTTACTGGCTTCTGAATGAACAATTTGCAGATTGTTTTAGAAGAATATATGAAATCAAGGCAAGGAAAGGATTGGCCCTGGTAGATATTGTGAGAGAAGTGACAATGTTTGTTTTTAAGATCAAGATGCCTTCAGGTGTTAGAGTACAGTTGATGAATGATTTGGCTGACATAGAGTATAGATTAAGTTTTGGGTGCAACGATAAGCTCCAGCTTGGATCAGTTATTGCTTCTTTTACTCGTGCTAGATCTGCATTGGTTGCAGCTGCTATATAA 2367 0.4398 MDVKSKGIALTLFFFWGLSAIFPLSFSAANQLRNIKKPAQPTSGNRRSSSAVFQVQGNVYPLGYYSASLNIGNPPKLYDFDIDSGSDLTWVQCDAPCKGCTKPRDQLYKPNNNLVRCVDQLCAAVQSSTSHHCSAPNEQCDYEVEYADHGSSLGVLVQDYIPLRFTNGSVLRPKVAFGCGYDQKYSGPTSPPSTAGVLGLGSGKASILSQLSSLGLIRNVVGHCLSARGGGFLFFGNDLIPSSGISWTPMLPSSSVKHYISGPADLLFNAKPTTVKGLQVIFDSGSSYTYFNSQTYQAIVNMILDDLKGKQLTRAAEDPSLPICWKGAKPFKSLRDVSNFFKPLALSFTKIKNLQLQLPPPAYLIVTKHGNVCLGILNGTGVGLGNINIIGDIFLQDKMVIYDNEKKQIGWVSANCDRRPKYKQSTTNKMTDTISLSPMEIDNDNNNFSAITDKGKRVVAAGKATLWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGVQSHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDVVHVSERLKHVIKSEGLDVTDSGLAALVCLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADCFRRIYEIKARKGLALVDIVREVTMFVFKIKMPSGVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAI 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1197 788 FunFam Replication factor C subunit 5 459 624 - -
Glsi10g1197 788 SUPERFAMILY post-AAA+ oligomerization domain-like 689 779 IPR008921 GO:0003677|GO:0006260
Glsi10g1197 788 CDD nucellin_like 63 416 IPR033823 GO:0004190
Glsi10g1197 788 FunFam Aspartyl protease family protein 42 237 - -
Glsi10g1197 788 Gene3D - 627 688 - -
Glsi10g1197 788 Pfam Xylanase inhibitor N-terminal 65 237 IPR032861 -
Glsi10g1197 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 682 IPR027417 -
Glsi10g1197 788 CDD HLD_clamp_RFC 624 686 - -
Glsi10g1197 788 Pfam Xylanase inhibitor C-terminal 277 411 IPR032799 -
Glsi10g1197 788 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 467 770 - -
Glsi10g1197 788 SMART AAA_5 497 627 IPR003593 GO:0016887
Glsi10g1197 788 SUPERFAMILY Acid proteases 57 419 IPR021109 -
Glsi10g1197 788 Gene3D - 689 786 - -
Glsi10g1197 788 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 280 291 IPR001969 GO:0004190|GO:0006508
Glsi10g1197 788 Pfam ATPase family associated with various cellular activities (AAA) 501 621 IPR003959 GO:0005524|GO:0016887
Glsi10g1197 788 FunFam Replication factor C subunit 5 626 688 - -
Glsi10g1197 788 Pfam Replication factor C C-terminal domain 689 775 IPR013748 -
Glsi10g1197 788 PRINTS Pepsin (A1) aspartic protease family signature 388 403 IPR001461 GO:0004190|GO:0006508
Glsi10g1197 788 PRINTS Pepsin (A1) aspartic protease family signature 71 91 IPR001461 GO:0004190|GO:0006508
Glsi10g1197 788 PRINTS Pepsin (A1) aspartic protease family signature 280 291 IPR001461 GO:0004190|GO:0006508
Glsi10g1197 788 FunFam Replication factor C subunit 5 689 786 - -
Glsi10g1197 788 Gene3D Acid Proteases 40 237 IPR021109 -
Glsi10g1197 788 Gene3D Acid Proteases 241 418 IPR021109 -
Glsi10g1197 788 CDD AAA 485 623 - -
Glsi10g1197 788 Gene3D - 459 623 IPR027417 -
Glsi10g1197 788 ProSiteProfiles Peptidase family A1 domain profile. 65 412 IPR033121 -
Glsi10g1197 788 FunFam Aspartic proteinase Asp1 isoform A 241 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1197 Glsi-ChrGlsi10 8065411 8077508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1197 437 787 Core DNA Replication Machinery Family AT1G77470 78.571 0.0 568
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1197 10 8065411 8077508 Glsi10g1197 10 8065411 8077508 ECH