Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1175 ATGGCTCATATAACCACCAATTCCCCCCTTTCTCGTCGTATAGTTCGTGCCTTCTTGGACTTCCTCAACTCAGTCGAACCTGCCCCTGGCGTTGATCTTGAAGGGCTTGAGGTTGCTAGGGAGTGTTTGACTGAGGTGTTTAAACTTGACTCATTTCCTATAGACGATAATGCAAAATCTGATTCATTGGTTGACATATTCAAGTCCCTTGAATCAAGCAAGCAATGTCAAGTTGGCAAGTCAGAGGTTGGCAATCAACCATATTCTGTGGGTGCTTCCAGTTCATTGTCTGCCCAGAATGCTGCTCATACTAAAAATCATTTGGAGGATGAAGACTGGACACGGGGCTCTCACACTTTTGGAGTGTCTAAGGATGAACTCTGCGGGCAATTCTTTGCTGCTCTTGAGAAAACTCACTTCTTTAGGACCAACCCTGATGGGAGTGATGACCCTGTGCAACTGGAGAAAGCATCTTGTTTATTTAATGATGCATTAATGGAGATGGAGGGATCTGGGTGTCGGGAGTTTAGTCTAAAGAACTTGGCTGAATCACTAAAATCACAAGGTAATAAGGCGATGCAATCCAAGCAATACCCTGATGCAATTGAGTTGTATAACTGTGCAATTGCGCTATGTCAAGAGAATGCTGTTTACTACTGCAACAGGGCGGCTGCTTACACTCAGATCGACAAATATATGGAAGCAATCCAAGATTGTCTTAAATCTATTGAGATTGATCCAAACTATAGCAAGGCATACAGTCGTCTGGGCTTAGCTTATTATGCACAAGGAAATTACAGAGATGCTATTGATAAAGGGTTTAGAAAAGCCTTGCAGTTGGATCCAAACAATGAGTCTGTTAAAGAAAATATACGGGTTGCCGAGCAAAAATTGATAGAGGAGCAACATCATACTGATCACAATCAGAATTCAGGATCATCTCAAGAGCCCCAGAATCAGTCTGCACGAGGGTCAAGAAGCCATTCATCGCCACCTCCATTTAACTCCATGCCATTTAATGCCAATGATCTTGCAAGCATGTTTATGAACATAGCCGCAAATACTGCCAATACGTATCAAGGACAGCATCCCCAGGAAAGTCAGGGAGAAGGTAGCAATACCAATGCAACTAATGAACCTGAAATAAGAATTGGGGGGAATGTTAGTTTGAACTTTGATCAAATGCCCGAGGATCTAACGGGGGCTTTTAGATCCGTGATGGAAATGTTATCTGGGGCAGCACCTACTGGGCAACCACAAGATCACGCGAATGGAAGAACTGCTCCAAACTAA 1293 0.4339 MAHITTNSPLSRRIVRAFLDFLNSVEPAPGVDLEGLEVARECLTEVFKLDSFPIDDNAKSDSLVDIFKSLESSKQCQVGKSEVGNQPYSVGASSSLSAQNAAHTKNHLEDEDWTRGSHTFGVSKDELCGQFFAALEKTHFFRTNPDGSDDPVQLEKASCLFNDALMEMEGSGCREFSLKNLAESLKSQGNKAMQSKQYPDAIELYNCAIALCQENAVYYCNRAAAYTQIDKYMEAIQDCLKSIEIDPNYSKAYSRLGLAYYAQGNYRDAIDKGFRKALQLDPNNESVKENIRVAEQKLIEEQHHTDHNQNSGSSQEPQNQSARGSRSHSSPPPFNSMPFNANDLASMFMNIAANTANTYQGQHPQESQGEGSNTNATNEPEIRIGGNVSLNFDQMPEDLTGAFRSVMEMLSGAAPTGQPQDHANGRTAPN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1175 430 MobiDBLite consensus disorder prediction 89 110 - -
Glsi10g1175 430 SUPERFAMILY TPR-like 181 295 IPR011990 GO:0005515
Glsi10g1175 430 Gene3D Immunoglobulin FC, subunit C 3 73 - -
Glsi10g1175 430 MobiDBLite consensus disorder prediction 89 103 - -
Glsi10g1175 430 Pfam Tetratricopeptide repeat 251 284 IPR013105 -
Glsi10g1175 430 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 177 330 - -
Glsi10g1175 430 SMART tpr_5 250 284 IPR019734 GO:0005515
Glsi10g1175 430 SMART tpr_5 182 215 IPR019734 GO:0005515
Glsi10g1175 430 SMART tpr_5 216 249 IPR019734 GO:0005515
Glsi10g1175 430 PANTHER LD24721P 1 424 IPR047150 -
Glsi10g1175 430 ProSiteProfiles TPR repeat profile. 216 249 IPR019734 GO:0005515
Glsi10g1175 430 MobiDBLite consensus disorder prediction 308 341 - -
Glsi10g1175 430 ProSiteProfiles TPR repeat profile. 250 284 IPR019734 GO:0005515
Glsi10g1175 430 Pfam Tetratricopeptide repeat 216 249 IPR001440 GO:0005515
Glsi10g1175 430 Gene3D Tetratricopeptide repeat domain 177 331 IPR011990 GO:0005515
Glsi10g1175 430 MobiDBLite consensus disorder prediction 359 381 - -
Glsi10g1175 430 MobiDBLite consensus disorder prediction 304 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1175 Glsi-ChrGlsi10 7927605 7937308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1175 181 280 U-box Gene Family AT3G07370 32.000 9.76e-09 54.3