Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1159 ATGGTTAAGACCGAGATCCACTCAGAGCCATCAAAGCCAATGCAGTCTTTATCATCATCAGCATCAGATGGCAAGAAGAAGTACAAGGGAGTCCGAATGAGGAGCTGGGGCTCATGGGTATCAGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGTTAGGCTCTTATTCAACCTCGGAGGCAGCAGCCAGAGCCTATGATGCTGCACTTCTATGCCTTAAAGGCTCCTCAGCCAGTCTCAATTTCCCTTTAAGTTCTTCACACTACATTCCTCAAGATACTGTCATGTCCCCCAAGTCAATCCAAAGAGTAGCTGCTGCAGCTGCCAATAGTTTTGTGGACAATGGCAGCACCCCACCTTCCCCTCCCCCTCCCTCAACCTCATCCTCATCAGTCTCCTCCCCATCAATGTCTTCCTCTCCCTCAGATCAAATCGAAGATGATGTTTCACTTATGCCATCCTTTGAGCCCTTCTTTACCTGTGATCAGGCAAATGAACCAATGGCCGCGATGGAATCTTGGTACAGCTTTGATGGTCTACAGTCCCCAAAATATGTAGATCAAATGCTAAGTGGTGCTTTCTTTGATATTGATCCACACCAGCTGCTCGATGATTTATACGAAGAAAGCGACATTCGTTTGTGGAGCTTCTGCTGA 660 0.4682 MVKTEIHSEPSKPMQSLSSSASDGKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTSEAAARAYDAALLCLKGSSASLNFPLSSSHYIPQDTVMSPKSIQRVAAAAANSFVDNGSTPPSPPPPSTSSSSVSSPSMSSSPSDQIEDDVSLMPSFEPFFTCDQANEPMAAMESWYSFDGLQSPKYVDQMLSGAFFDIDPHQLLDDLYEESDIRLWSFC 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1159 219 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Glsi10g1159 219 MobiDBLite consensus disorder prediction 9 23 - -
Glsi10g1159 219 MobiDBLite consensus disorder prediction 1 27 - -
Glsi10g1159 219 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Glsi10g1159 219 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Glsi10g1159 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 156 - -
Glsi10g1159 219 MobiDBLite consensus disorder prediction 113 147 - -
Glsi10g1159 219 FunFam ethylene-responsive transcription factor ERF014-like 26 86 - -
Glsi10g1159 219 CDD AP2 26 86 IPR001471 GO:0003700|GO:0006355
Glsi10g1159 219 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Glsi10g1159 219 Gene3D AP2/ERF domain 26 86 IPR036955 GO:0003700|GO:0006355
Glsi10g1159 219 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Glsi10g1159 219 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Glsi10g1159 219 MobiDBLite consensus disorder prediction 131 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1159 Glsi-ChrGlsi10 7804293 7804952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1159 28 218 AP2-EREBP Transcription Factor Family AT1G21910 52.970 7.71e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi10g1159 AP2 3.5e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1159 10 7804293 7804952 Glsi10g1159 10 7804293 7804952 ECH