Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1157 ATGTCTTTAAGCCCTCCTCGTGCAAGGACGAATGGGCAACCCCGAACCTACCAGCTCTACTGGTGCTTCCAGTGTGATCGGATGGTCAGGCTCGCCCCCACGGACCCGTCTGAGATTTTTTGCCTTCGCTGTTTTGGACAATTCATCTGTGAAATAAACATAACAAGACCAAGACTTGTTGTCGATTTCACCAATCACGACCCTTCACCAGAAGCGCGTTTGCTGGAGGCGCTTTCCCTAGTGCTTGAACCCCCAATCCGGCGGTTCGACGGCCACCTCTCTGATCCAGAATCTGAGCCTCAACGCTTTCGTTGGATTCAGCGGCGACCTTACCAACAAGAAGGCAGACAGCATGAATATACAGATGCTGAAATTCCTGTTCGTCACATAAGACGTCCTCGACATCGTAGTTTTGATGCCAGAGCTAATAATTCCGACACAGAACCTGGAATCCAACCTCGCCCTCGGACTTGGATTGCTCTTCGACCCGCGAATGCTTCTAACTCGTTTGAATCGATCCCACGGCGACAAAATTCAATCCCACGGCGGGTTGATCCAAGAGACTACTATTTTGGGCCGGGTCTGAACGAACTGGTTGAGCAATTGACGGAAAATGACCGGCAAGGTCCCCCGCCGGCGCCGGACAGAGTTATCAATGCGATACCCAGTGTGAAAATATCGGAGACCCATTTGAAGGAGAACTCTCACTGCCCGGTTTGCCAGGAAGAGTATGCAGTGGGTGGAGAAGCGAGGGAGTTGCCCTGCAAGCATATATACCATTCTGATTGCATTGTTCCTTGGCTAAGGCTTCACAATTCTTGCCCTGTTTGCCGGCATGAGGTGCCGGTTTGTTCTGAGTCCTACGAGTCCAGTGACGATGGAGGAGGCAGGATGCAAAGGTGTTTGAGGTGGAGCCAATTGGCTTCTCTTTGGCCTTTCCATGGAAGGTATCGAAGGGTTAATCCAGGAGGAGAGAATGTTGCTTCTTCTTCAAGGGTTAATAATTAA 1008 0.5079 MSLSPPRARTNGQPRTYQLYWCFQCDRMVRLAPTDPSEIFCLRCFGQFICEINITRPRLVVDFTNHDPSPEARLLEALSLVLEPPIRRFDGHLSDPESEPQRFRWIQRRPYQQEGRQHEYTDAEIPVRHIRRPRHRSFDARANNSDTEPGIQPRPRTWIALRPANASNSFESIPRRQNSIPRRVDPRDYYFGPGLNELVEQLTENDRQGPPPAPDRVINAIPSVKISETHLKENSHCPVCQEEYAVGGEARELPCKHIYHSDCIVPWLRLHNSCPVCRHEVPVCSESYESSDDGGGRMQRCLRWSQLASLWPFHGRYRRVNPGGENVASSSRVNN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1157 335 FunFam E3 ubiquitin-protein ligase RING1-like 201 284 - -
Glsi10g1157 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 292 IPR013083 -
Glsi10g1157 335 Pfam zinc-ribbon 18 52 IPR039525 GO:0061630
Glsi10g1157 335 ProSiteProfiles Zinc finger RING-type profile. 237 278 IPR001841 -
Glsi10g1157 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 119 282 - -
Glsi10g1157 335 SMART ring_2 237 277 IPR001841 -
Glsi10g1157 335 Pfam Ring finger domain 236 278 IPR001841 -
Glsi10g1157 335 SUPERFAMILY RING/U-box 217 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1157 Glsi-ChrGlsi10 7792826 7793833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1157 181 289 C3H Transcription Factor Family AT5G01980 42.342 8.68e-25 102