Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1153 ATGGCCACGCCCATGTCCGTTGACACGTATGCCATCCCTGAGCTCGATTTTTCCGACTACGCCACCACTTCTTCCGACGACGAACATGCGGGTTGTAATTGGAACCACTGGTCCCCCGTCGTCAACTGGGACTCCTTCACCCTTGTCCCTTCCCAAGACGGCTTCCACGACCTCATCGAATCCATGATGGACGATGCTGCCGCGGTGGAAGAGGAAGGGTGCTGCAACTCTACTACGACGGAGGAAACCATGGCGGACGAAGAAGCAAACGGCGTGGACGATTTCAAGGGTCTAAGACTGGTCCACCTGCTGATGGCAGTCGCGGAGGCTCTCACCGGTGTCAACAAGAGCCGTGATCTTGCTCGAGTGATATTGGTTCGTCTCAAGGAGCTGGTGTCCCCAACCGAGGGCACCAACATGGAGAGGCTGGCCGCATATTTTACAGACGCCTTGCAGGGTTTGCTAGAAGGATCCGGGGGTGCGCACAATAAGCATTGGATCTGCAACAGTGGATCCCACCGTGACGAGCATCATCAGAACGACATGCTCGCTGCCTTCCAGCTGCTTCAGGACATGTCCCCGTACGTGAAGTTCGGCCACTTCACAGCCAATCAGGCCATCATAGAGGCCGTGGCCCAGGACAGGCGAGTCCACATCGTGGACTATGACATCATGGAAGGGACCCAGTGGGCCTCATTAATGCAGGCCTTAGCCTCTAGAAAGGATGGCCCACCAGGCCCACACGTCAGGATCACGGCTTTGTCCAGAGGAGGAAGCGGAAGAAGATCGATCGCCACCGTCCAAGAGACGGGTCGTCGTTTGACTGCGTTTGCGGCATCTATTGGACAACCCTTCTCGTTTCATCAATGCAGGTTAGACTCCGACGAAACGTTTCGACCGTCCGCTTTGAAGCTGGTTCGAGGGGAGGCCGTGGTGTTCAACTGCATGCTGCACCTGCCCCACCAGAGCTACCGGGCGGCGGAGTCCGTTGCCTCGTTTGTGAGCGGAGCAAAAACGTTGAAACCGAGATTAGTGACGTTGGTGGAAGAGGAGGCGGGGCCCATAGGGGAAGTAGGGTTTGTGGGGCGGTTCCTGGACTTGTTGCACCGTTATTCGGCGGTGTATGATTCGCTGGAGTCTGGGTTTCCGATGCAAAGCCGAGCAAGGGCATTGGTGGAGCGGGTGTTCTTGGGGCCCCGAATAGCTGGGTCGTTAGGGAGGATATACAGAACGGGTGGGGAAGAGGAGAGAGGGTCGTGGGGGGAGTGGTTGGGTGAGGTGGGGTACAAGGGAGTAGAAATAAGTTTCGCAAATCATTGTCAAGCGAAACTGTTATTAGGTTTATTCAACGATGGGTATAGGGTGGAGGAGTTGTGTAGTAATAAGTTGGTTTTGAGTTGGAAATCTAGGCGTTTGCTTTCCGCCTCTCTTTGGACATATTCTTCGCCCTCCTCTGACTTGTAA 1464 0.5533 MATPMSVDTYAIPELDFSDYATTSSDDEHAGCNWNHWSPVVNWDSFTLVPSQDGFHDLIESMMDDAAAVEEEGCCNSTTTEETMADEEANGVDDFKGLRLVHLLMAVAEALTGVNKSRDLARVILVRLKELVSPTEGTNMERLAAYFTDALQGLLEGSGGAHNKHWICNSGSHRDEHHQNDMLAAFQLLQDMSPYVKFGHFTANQAIIEAVAQDRRVHIVDYDIMEGTQWASLMQALASRKDGPPGPHVRITALSRGGSGRRSIATVQETGRRLTAFAASIGQPFSFHQCRLDSDETFRPSALKLVRGEAVVFNCMLHLPHQSYRAAESVASFVSGAKTLKPRLVTLVEEEAGPIGEVGFVGRFLDLLHRYSAVYDSLESGFPMQSRARALVERVFLGPRIAGSLGRIYRTGGEEERGSWGEWLGEVGYKGVEISFANHCQAKLLLGLFNDGYRVEELCSNKLVLSWKSRRLLSASLWTYSSPSSDL 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1153 487 ProSiteProfiles GRAS family profile. 91 479 IPR005202 -
Glsi10g1153 487 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 80 475 IPR005202 -
Glsi10g1153 487 Pfam GRAS domain family 100 479 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1153 Glsi-ChrGlsi10 7757798 7759261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1153 108 482 GRAS Transcription Factor Family AT3G54220 37.076 8.75e-56 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Glsi10g1153 GRAS 3.2e-98 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1153 10 7757798 7759261 Glsi10g1153 10 7757798 7759261 ECH