Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1146 ATGGCTGAGACTCGGAGATCTACGGGCACTGTCAAATGGTTCAATCCTCACAAGGGTTTCGGATTCATAGGCCCCGATGATGGTGGCGAGGATCTCTTTGTCCATCAGACTTCCATCCGATCCGATGGCTATCGCACCTTATCCGAGGGTCAGACCGTGGAGTTCGTTCTGGACTACGGCGAAGGTGGACGAACGAAAGCTGTTGACGTCATTGCTGTGATGAGATCCCGCCGTTTTAGTGGAATTCGTGGTGGCAGTGGAAGAGGGTTTTATGGGGGGAGAGGCAGAGGGCGTGGATATGGCGGGTACGGTGGACGCTATGGTGGTGGCGATGGTCGTGATGATTATGAATATGGCAGAGGCGGAGGGATTGGGCGGAGAGGTGGCGGCTACAGTGGTGGAGGTGGTAGATATGATGGAGGCCCTGAGTGTTATAATTGTGGCCGAATGGGTCACTTGGCGAGAGATTGTTATCAGAGTACTAGTGGTGGGCCTCGGAGACGCGGCGGCGGTAGTGGAGGCGGAGGAGCTGGAGGAGGAGGGTGTTTTAATTGCGGGGAAGAAGGGCATTTTGCGAGGGAATGTCCCCATGTTGATAAATGA 603 0.5489 MAETRRSTGTVKWFNPHKGFGFIGPDDGGEDLFVHQTSIRSDGYRTLSEGQTVEFVLDYGEGGRTKAVDVIAVMRSRRFSGIRGGSGRGFYGGRGRGRGYGGYGGRYGGGDGRDDYEYGRGGGIGRRGGGYSGGGGRYDGGPECYNCGRMGHLARDCYQSTSGGPRRRGGGSGGGGAGGGGCFNCGEEGHFARECPHVDK 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1146 200 Gene3D - 135 171 - -
Glsi10g1146 200 Gene3D - 177 200 - -
Glsi10g1146 200 Gene3D - 1 71 IPR012340 -
Glsi10g1146 200 SMART csp_8 8 73 IPR011129 GO:0003676
Glsi10g1146 200 SUPERFAMILY Retrovirus zinc finger-like domains 136 197 IPR036875 GO:0003676|GO:0008270
Glsi10g1146 200 ProSiteProfiles Zinc finger CCHC-type profile. 182 196 IPR001878 GO:0003676|GO:0008270
Glsi10g1146 200 Pfam Zinc knuckle 143 157 IPR001878 GO:0003676|GO:0008270
Glsi10g1146 200 Pfam Zinc knuckle 181 197 IPR001878 GO:0003676|GO:0008270
Glsi10g1146 200 CDD CSP_CDS 8 70 IPR002059 GO:0003676
Glsi10g1146 200 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Glsi10g1146 200 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Glsi10g1146 200 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Glsi10g1146 200 ProSiteProfiles Zinc finger CCHC-type profile. 144 157 IPR001878 GO:0003676|GO:0008270
Glsi10g1146 200 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Glsi10g1146 200 Pfam 'Cold-shock' DNA-binding domain 8 71 IPR002059 GO:0003676
Glsi10g1146 200 SMART c2hcfinal6 181 197 IPR001878 GO:0003676|GO:0008270
Glsi10g1146 200 SMART c2hcfinal6 143 159 IPR001878 GO:0003676|GO:0008270
Glsi10g1146 200 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Glsi10g1146 200 PANTHER COLD SHOCK DOMAIN PROTEIN 2 116 197 - -
Glsi10g1146 200 SUPERFAMILY Nucleic acid-binding proteins 5 72 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1146 Glsi-ChrGlsi10 7704122 7704724 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Glsi10g1146 CSD 1.7e-23 CL0021