Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1139 ATGAGCAAACCCAGAACCCATAGAAAACCCACCAAGCATGCCATTGCCAACCAAAACCAAAAGCCCCCAAAAACAGAGAAACAGCCCTCGTGGGCAGTGGTAAGAGGCCTATTGACTTGTAGAAATGTCCAAACCCAACAGCAGAAGAAGCAGCCGCAGCCGCAACGGCAACCGCAAACGATGCCCGATGGCAATCAACCAAAGCAAAAACAAGAACAGAGAAAGCTACAAGAAGAAAGAATCCCAGAAGAAAATGGCAAGAAATGCAAGAAAATGAAATGTTCAGGTTCGCTTTGTAATAACACCAAGATCACGGCGAGGCTTGAATCAGGATGCCCTGATATTCACAAGAAAAGGGTCTCACTGGGCGCATCTAACACCAATGATGCTTCAAGCAGATCCATGAAAGCTCCTCCGCATGAACCCAATGGTGCAATGTCTGCTTCCTCTTCTTCGTTGCCAGCATCTTCTAATGCTTCTGTTAGTGGGTCTTTTAGGGGAATGCCCTTCGGGAGACTCTCTGGTTGTTCTGAGTGTCGAATGGTGGTTGACCCTCTTCTGGGTTTCACCAGAGACCCTTCTCTGCGGGGTAGCATTTGTTCTTGCCCTGACTGTGGTGAGATCTTCATGAAAGCTGAAAGTTTGGAGCTTCATCAGGCTGTTAAACATGCAGTTTCTGAACTGGGACCGCAAGATACAAGCAAGAACATAGTAGAAATCATATTCCATTCAAGCTGGCTCAAGAAACAATCTCCAGTGTGCAAAATCGACCGCATCCTTAAGGTTCACAATACCCAGAAGACGATTAGCAGATTCGAAGGGTACAGAGACTCGATCAAAGCCAAAGCCACAAAGCTTTCCAAGAAACACCCACGTTGCATAGCAGATGGCAATGAGCTACTTAGGTTCCACTGCACCACCTTCGTCTGCTCACTAGGTTTGAATGGATCATCCAACCTCTGCAATTCAATACCACAATGCAATGTTTGTAGCATAATCAAGAATGGGTTCAAGGTCAGTGGAGAAATAATGAATGGAGGAAAGGGGATCTTGACAACGGCAACAAGTGGGAAGGCACACGACAAAGCCGGAGTTTCAGCGGATGGCAATAACGACAATAGGGCAATGCTGGTTTGCCGGGTGATAGCGGGCAGGGTGAAGAAGAATATGGATGGTAGCATGGAGGAGTATGATTCGGTGGCAGAGGCTGTTGGGGCTTATTCCAATTTGGACGAGTTGTACGTGTTCAACCCAAGAGCTATATTGCCTTGCTTTGTTGTAATCTATAGGGGGTTTTGA 1299 0.4681 MSKPRTHRKPTKHAIANQNQKPPKTEKQPSWAVVRGLLTCRNVQTQQQKKQPQPQRQPQTMPDGNQPKQKQEQRKLQEERIPEENGKKCKKMKCSGSLCNNTKITARLESGCPDIHKKRVSLGASNTNDASSRSMKAPPHEPNGAMSASSSSLPASSNASVSGSFRGMPFGRLSGCSECRMVVDPLLGFTRDPSLRGSICSCPDCGEIFMKAESLELHQAVKHAVSELGPQDTSKNIVEIIFHSSWLKKQSPVCKIDRILKVHNTQKTISRFEGYRDSIKAKATKLSKKHPRCIADGNELLRFHCTTFVCSLGLNGSSNLCNSIPQCNVCSIIKNGFKVSGEIMNGGKGILTTATSGKAHDKAGVSADGNNDNRAMLVCRVIAGRVKKNMDGSMEEYDSVAEAVGAYSNLDELYVFNPRAILPCFVVIYRGF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1139 432 MobiDBLite consensus disorder prediction 123 161 - -
Glsi10g1139 432 SUPERFAMILY ADP-ribosylation 225 431 - -
Glsi10g1139 432 ProSitePatterns Zinc finger C2H2 type domain signature. 200 223 IPR013087 -
Glsi10g1139 432 MobiDBLite consensus disorder prediction 68 91 - -
Glsi10g1139 432 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 228 IPR013087 -
Glsi10g1139 432 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 91 429 - -
Glsi10g1139 432 MobiDBLite consensus disorder prediction 144 161 - -
Glsi10g1139 432 FunFam C2H2-like zinc finger protein 224 430 - -
Glsi10g1139 432 Gene3D - 224 430 - -
Glsi10g1139 432 MobiDBLite consensus disorder prediction 42 93 - -
Glsi10g1139 432 MobiDBLite consensus disorder prediction 1 30 - -
Glsi10g1139 432 MobiDBLite consensus disorder prediction 42 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1139 Glsi-ChrGlsi10 7672591 7674276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1139 22 430 C2H2 Transcription Factor Family AT1G75710 43.468 2.80e-103 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi10g1139 None None None