Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1138 ATGGGTCTACAACTGCGGGAGCTCAATGAAACAAAGCAAATGAAGACCATAGCGAGCCCACTACAGTTGGCATACCGCCAAACGGGAGATTTCAAAACCTCCCACTCCAGAGCGCTCTCCTTCCCTGGCTTCGAGTGGAAATGCCGTGGAGATTACTCCATGGATGGGAAGGCTAACCTTCCGGTACCACTTCCAACCGCGAAGAACCTGATCCGTCCAGGCAATCCCGATACTACATCGTCTTCATCATCTTCCTTCTCTTCTTCCTCGCCTCCGGACTTCCTTCGGCATGTTCAAGCCGCCTTGAAGCGCCATCGTCCTATCGGTACAATGCAATCAAATATAAGGCCAAGACGCATGATGGTTCCTCAAAGAGAGGTGTCAAGGAGTTCTACATCGAATATTGGTCCAACTGTAGATATTAAAAAGTCCCAAGACATATCATTGAGTAAGGGTCAGTCGGATAAGGATTCACTTGCACATAGAAAGAGCACAACCTCTATTATTGGGGAAGGTCAAGAGGATGCATCAATCACACCTCCTTCAATTTCTGGCACTTGCAACAATACATTTGATGAAGGTTGCAAACCATTTGATGCACAAGAAAATCATCCGAAGGAAATGGCTAATTGTAAAGACAAGATTATAATGCATCCTTTGCAGATGGAATGTCAAAATGTAGATGGTCAGAAGAAAGTGCAGTTCTCAATTGGAAACAACAATACTGTCCAGGGGGCCCATGATGGAAAGGCCACTGACTTGGAGAACTTATCATCTCATATGGGTTCACTTGCATTGACAGAAATGGAATGGGCTGCAAGCTGCCAGCCGGAAGCATCTAATGTATTCAATCAAGATTCAAAGCACCAAAATATTTTGCATGCGGAGTCAGAATTCAGTTTGAGATCTGATGGTGGATTAAGTTCCCTGTTGTCAAAGAGAACAACAGCTATTCAGGATAATCTGCAGCAATTTAGAAACTTTTTAAATCAGCCAGCTACTCAATCTTCAGTAGTGGGACCTTCATGTGCTACAACAACATCAGTCCATTCATCTTCAGCTCCCATGCTAAATTCAACAACCCATTATTCTCAATCACATCTAGATAGTGGCTCACATGTGGCAGCAGAACCTTTGAGGGACAATAATGTTAATTCTCATCCTATAACTCAAGGGGTCACTTCCCGAAAAGAGAGCAATAGAATGTCAGTTGATCAGACAGGAATTGCATACCAAGCTCCTGGGTCTTCCGTTAATGTGGAGTTGGCATTTAAGGACGGTGACCTCTCTAAAGAGCAGCAAGGAAGCATGCTAAAGGAAACTAACATTTCTAAAAATACTTCTTATCATGATGATAAGTCAACTAAGGGGAAAGAGTCTGCAGATGTTACCAACATACAACCCCAGGCACCAATGCCCAAAACCTCATCTTCAGATGTGAAGTTCGAGTCTTCTAAGACAGAAAAACAAGAGAGGGCAGCAAGTAGTAAAGGTGCATCGGCTGCTCGGAAAAGGACCTATGACCCTGATTTGTTCTTCAAAGTAAGTGGCAAGCTGTATCAAAGACTTGGCAAGATAGGTAGTGGAGGAAGCAGTGAAGTACACAAAGTAATTTCATCAGACTGTAAAATCTACGCACTTAAAAAGATCAAGCTAAAGGGTCGTGATTATGCCACTGCATATGGGTTTTGTCAAGAGATTGAGTATCTAAATAGGCTGAAGGGAAAGAATAATATTATACAGCTTATTGACTATGAGGTGACTGACAAGGCTTTGCATGAGGAAGTCATGAGAGGCTTCTTGAGCAATAAGGATGGCCGCGTAAAGGATGATGGATATATATACATGGTGCTTGAATATGGGGAAATTGATTTGGCTCACATGCTGTCCCAGAAGTGGAAAGAACTGGATGGATACAACCAAACCATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAACACAATACACGAGGAACGTATTGTGCACTCTGACTTGAAGCCAGCCAACTTCCTTCTAGTCAAAGGTTCCCTAAAACTGATTGATTTTGGTATAGCTAAAGCAATAATGAGCGATACAACAAACATCCAACGGGATTCACAGGTAGGTACTCTGAGTTACATGTCTCCAGAGGCATTTATGTGCAATGAGAGTGATGCAAATGGAAATATCATAAAGTGTGGTCGGCCATCGGATATTTGGTCCCTGGGCTGCATTCTTTATCAAATGGTATATGGTAGAACACCTTTTTCAGAGTACAAGACATTCTGGGCCAAATTCAAAGTTATAACAGATCCAAATCATGAAATTACGTATGAACCAGTTTCAAACCCATGGCTTCTGGATCTTATGAAAAGGTGTCTAGCATGGGACCGCAATGAAAGGTGGAGAATTCCTCAGTTACTCCAACATCCTTTCCTTGTTCCGCCAGTTCCATCTCAGCCTTCCTCGGCTCAAGACCAAAGCTTTATATTGCTACAATTTATTGCTGAAACTTGTATAGATGACCCAGAAGCTTCGCAGCTGTGTTGTCAGCTCCAGCACGTGCTTGGTGATCCACTCAAGTTTATAACTCCTCACTCACTAAAGTCACGTGATCAACAACGTAAACTGCTGACCCACTTGTCAGAACTTTGCCTCCAGCTGCGGGAACGTTTGACAAATACAGATAAAGAATGA 2697 0.429 MGLQLRELNETKQMKTIASPLQLAYRQTGDFKTSHSRALSFPGFEWKCRGDYSMDGKANLPVPLPTAKNLIRPGNPDTTSSSSSSFSSSSPPDFLRHVQAALKRHRPIGTMQSNIRPRRMMVPQREVSRSSTSNIGPTVDIKKSQDISLSKGQSDKDSLAHRKSTTSIIGEGQEDASITPPSISGTCNNTFDEGCKPFDAQENHPKEMANCKDKIIMHPLQMECQNVDGQKKVQFSIGNNNTVQGAHDGKATDLENLSSHMGSLALTEMEWAASCQPEASNVFNQDSKHQNILHAESEFSLRSDGGLSSLLSKRTTAIQDNLQQFRNFLNQPATQSSVVGPSCATTTSVHSSSAPMLNSTTHYSQSHLDSGSHVAAEPLRDNNVNSHPITQGVTSRKESNRMSVDQTGIAYQAPGSSVNVELAFKDGDLSKEQQGSMLKETNISKNTSYHDDKSTKGKESADVTNIQPQAPMPKTSSSDVKFESSKTEKQERAASSKGASAARKRTYDPDLFFKVSGKLYQRLGKIGSGGSSEVHKVISSDCKIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKNNIIQLIDYEVTDKALHEEVMRGFLSNKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGYNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEITYEPVSNPWLLDLMKRCLAWDRNERWRIPQLLQHPFLVPPVPSQPSSAQDQSFILLQFIAETCIDDPEASQLCCQLQHVLGDPLKFITPHSLKSRDQQRKLLTHLSELCLQLRERLTNTDKE 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1138 898 FunFam serine/threonine-protein kinase mph1 isoform X2 513 600 - -
Glsi10g1138 898 Pfam Protein kinase domain 520 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1138 898 MobiDBLite consensus disorder prediction 122 162 - -
Glsi10g1138 898 ProSitePatterns Protein kinases ATP-binding region signature. 526 548 IPR017441 GO:0005524
Glsi10g1138 898 MobiDBLite consensus disorder prediction 383 402 - -
Glsi10g1138 898 SUPERFAMILY Protein kinase-like (PK-like) 515 824 IPR011009 -
Glsi10g1138 898 CDD PKc_Mps1 518 813 IPR027084 -
Glsi10g1138 898 Gene3D Phosphorylase Kinase; domain 1 513 599 - -
Glsi10g1138 898 MobiDBLite consensus disorder prediction 64 93 - -
Glsi10g1138 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 667 679 IPR008271 GO:0004672|GO:0006468
Glsi10g1138 898 MobiDBLite consensus disorder prediction 125 154 - -
Glsi10g1138 898 SMART serkin_6 520 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1138 898 Gene3D Transferase(Phosphotransferase) domain 1 635 816 - -
Glsi10g1138 898 ProSiteProfiles Protein kinase domain profile. 520 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g1138 898 MobiDBLite consensus disorder prediction 378 402 - -
Glsi10g1138 898 MobiDBLite consensus disorder prediction 435 502 - -
Glsi10g1138 898 FunFam serine/threonine-protein kinase mph1 isoform X1 634 816 - -
Glsi10g1138 898 MobiDBLite consensus disorder prediction 445 459 - -
Glsi10g1138 898 MobiDBLite consensus disorder prediction 72 93 - -
Glsi10g1138 898 PANTHER MIXED LINEAGE PROTEIN KINASE 80 831 - -
Glsi10g1138 898 MobiDBLite consensus disorder prediction 460 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1138 Glsi-ChrGlsi10 7664147 7669433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1138 526 814 MAP Kinase Kinase Kinase AT4G08470 29.010 1.96e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Glsi10g1138 Pkinase 2.7e-56 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1138 10 7664147 7669433 Glsi10g1138 10 7664147 7669433 ECH