LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g1138	ATGGGTCTACAACTGCGGGAGCTCAATGAAACAAAGCAAATGAAGACCATAGCGAGCCCACTACAGTTGGCATACCGCCAAACGGGAGATTTCAAAACCTCCCACTCCAGAGCGCTCTCCTTCCCTGGCTTCGAGTGGAAATGCCGTGGAGATTACTCCATGGATGGGAAGGCTAACCTTCCGGTACCACTTCCAACCGCGAAGAACCTGATCCGTCCAGGCAATCCCGATACTACATCGTCTTCATCATCTTCCTTCTCTTCTTCCTCGCCTCCGGACTTCCTTCGGCATGTTCAAGCCGCCTTGAAGCGCCATCGTCCTATCGGTACAATGCAATCAAATATAAGGCCAAGACGCATGATGGTTCCTCAAAGAGAGGTGTCAAGGAGTTCTACATCGAATATTGGTCCAACTGTAGATATTAAAAAGTCCCAAGACATATCATTGAGTAAGGGTCAGTCGGATAAGGATTCACTTGCACATAGAAAGAGCACAACCTCTATTATTGGGGAAGGTCAAGAGGATGCATCAATCACACCTCCTTCAATTTCTGGCACTTGCAACAATACATTTGATGAAGGTTGCAAACCATTTGATGCACAAGAAAATCATCCGAAGGAAATGGCTAATTGTAAAGACAAGATTATAATGCATCCTTTGCAGATGGAATGTCAAAATGTAGATGGTCAGAAGAAAGTGCAGTTCTCAATTGGAAACAACAATACTGTCCAGGGGGCCCATGATGGAAAGGCCACTGACTTGGAGAACTTATCATCTCATATGGGTTCACTTGCATTGACAGAAATGGAATGGGCTGCAAGCTGCCAGCCGGAAGCATCTAATGTATTCAATCAAGATTCAAAGCACCAAAATATTTTGCATGCGGAGTCAGAATTCAGTTTGAGATCTGATGGTGGATTAAGTTCCCTGTTGTCAAAGAGAACAACAGCTATTCAGGATAATCTGCAGCAATTTAGAAACTTTTTAAATCAGCCAGCTACTCAATCTTCAGTAGTGGGACCTTCATGTGCTACAACAACATCAGTCCATTCATCTTCAGCTCCCATGCTAAATTCAACAACCCATTATTCTCAATCACATCTAGATAGTGGCTCACATGTGGCAGCAGAACCTTTGAGGGACAATAATGTTAATTCTCATCCTATAACTCAAGGGGTCACTTCCCGAAAAGAGAGCAATAGAATGTCAGTTGATCAGACAGGAATTGCATACCAAGCTCCTGGGTCTTCCGTTAATGTGGAGTTGGCATTTAAGGACGGTGACCTCTCTAAAGAGCAGCAAGGAAGCATGCTAAAGGAAACTAACATTTCTAAAAATACTTCTTATCATGATGATAAGTCAACTAAGGGGAAAGAGTCTGCAGATGTTACCAACATACAACCCCAGGCACCAATGCCCAAAACCTCATCTTCAGATGTGAAGTTCGAGTCTTCTAAGACAGAAAAACAAGAGAGGGCAGCAAGTAGTAAAGGTGCATCGGCTGCTCGGAAAAGGACCTATGACCCTGATTTGTTCTTCAAAGTAAGTGGCAAGCTGTATCAAAGACTTGGCAAGATAGGTAGTGGAGGAAGCAGTGAAGTACACAAAGTAATTTCATCAGACTGTAAAATCTACGCACTTAAAAAGATCAAGCTAAAGGGTCGTGATTATGCCACTGCATATGGGTTTTGTCAAGAGATTGAGTATCTAAATAGGCTGAAGGGAAAGAATAATATTATACAGCTTATTGACTATGAGGTGACTGACAAGGCTTTGCATGAGGAAGTCATGAGAGGCTTCTTGAGCAATAAGGATGGCCGCGTAAAGGATGATGGATATATATACATGGTGCTTGAATATGGGGAAATTGATTTGGCTCACATGCTGTCCCAGAAGTGGAAAGAACTGGATGGATACAACCAAACCATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAACACAATACACGAGGAACGTATTGTGCACTCTGACTTGAAGCCAGCCAACTTCCTTCTAGTCAAAGGTTCCCTAAAACTGATTGATTTTGGTATAGCTAAAGCAATAATGAGCGATACAACAAACATCCAACGGGATTCACAGGTAGGTACTCTGAGTTACATGTCTCCAGAGGCATTTATGTGCAATGAGAGTGATGCAAATGGAAATATCATAAAGTGTGGTCGGCCATCGGATATTTGGTCCCTGGGCTGCATTCTTTATCAAATGGTATATGGTAGAACACCTTTTTCAGAGTACAAGACATTCTGGGCCAAATTCAAAGTTATAACAGATCCAAATCATGAAATTACGTATGAACCAGTTTCAAACCCATGGCTTCTGGATCTTATGAAAAGGTGTCTAGCATGGGACCGCAATGAAAGGTGGAGAATTCCTCAGTTACTCCAACATCCTTTCCTTGTTCCGCCAGTTCCATCTCAGCCTTCCTCGGCTCAAGACCAAAGCTTTATATTGCTACAATTTATTGCTGAAACTTGTATAGATGACCCAGAAGCTTCGCAGCTGTGTTGTCAGCTCCAGCACGTGCTTGGTGATCCACTCAAGTTTATAACTCCTCACTCACTAAAGTCACGTGATCAACAACGTAAACTGCTGACCCACTTGTCAGAACTTTGCCTCCAGCTGCGGGAACGTTTGACAAATACAGATAAAGAATGA	2697	0.429	MGLQLRELNETKQMKTIASPLQLAYRQTGDFKTSHSRALSFPGFEWKCRGDYSMDGKANLPVPLPTAKNLIRPGNPDTTSSSSSSFSSSSPPDFLRHVQAALKRHRPIGTMQSNIRPRRMMVPQREVSRSSTSNIGPTVDIKKSQDISLSKGQSDKDSLAHRKSTTSIIGEGQEDASITPPSISGTCNNTFDEGCKPFDAQENHPKEMANCKDKIIMHPLQMECQNVDGQKKVQFSIGNNNTVQGAHDGKATDLENLSSHMGSLALTEMEWAASCQPEASNVFNQDSKHQNILHAESEFSLRSDGGLSSLLSKRTTAIQDNLQQFRNFLNQPATQSSVVGPSCATTTSVHSSSAPMLNSTTHYSQSHLDSGSHVAAEPLRDNNVNSHPITQGVTSRKESNRMSVDQTGIAYQAPGSSVNVELAFKDGDLSKEQQGSMLKETNISKNTSYHDDKSTKGKESADVTNIQPQAPMPKTSSSDVKFESSKTEKQERAASSKGASAARKRTYDPDLFFKVSGKLYQRLGKIGSGGSSEVHKVISSDCKIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKNNIIQLIDYEVTDKALHEEVMRGFLSNKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGYNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEITYEPVSNPWLLDLMKRCLAWDRNERWRIPQLLQHPFLVPPVPSQPSSAQDQSFILLQFIAETCIDDPEASQLCCQLQHVLGDPLKFITPHSLKSRDQQRKLLTHLSELCLQLRERLTNTDKE	898

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g1138	898	FunFam	serine/threonine-protein kinase mph1 isoform X2	513	600	-	-
	Glsi10g1138	898	Pfam	Protein kinase domain	520	813	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g1138	898	MobiDBLite	consensus disorder prediction	122	162	-	-
	Glsi10g1138	898	ProSitePatterns	Protein kinases ATP-binding region signature.	526	548	IPR017441	GO:0005524
	Glsi10g1138	898	MobiDBLite	consensus disorder prediction	383	402	-	-
	Glsi10g1138	898	SUPERFAMILY	Protein kinase-like (PK-like)	515	824	IPR011009	-
	Glsi10g1138	898	CDD	PKc_Mps1	518	813	IPR027084	-
	Glsi10g1138	898	Gene3D	Phosphorylase Kinase; domain 1	513	599	-	-
	Glsi10g1138	898	MobiDBLite	consensus disorder prediction	64	93	-	-
	Glsi10g1138	898	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	667	679	IPR008271	GO:0004672\|GO:0006468

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g1138	Glsi-ChrGlsi10	7664147	7669433	Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g1138	526	814	MAP Kinase Kinase Kinase	AT4G08470	29.010	1.96e-24	106

Showing 1 to 1 of 1 entries

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TTK	Glsi10g1138		Pkinase	2.7e-56	CL0016

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi10g1138	10	7664147	7669433	Glsi10g1138	10	7664147	7669433	ECH

Showing 1 to 1 of 1 entries