Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1133 ATGCTTGGAAGGAACTTGGTTAAAAAAAAAAAAAAACTGGGAACACGGAAGGATAAGCCTATTCCCACTGTTTCTTTCTGGGTGACCTCTCCTTCGGTTCTTCTTCACTTCCGTTCCCTATTGCAGAGTAGAAGTAAGATGGCACAAACGCTAGCAATGCCCGTGGCGCCCTCACTCTCTGTTATCTGCAATGGCCATATCTCTAATTCTCTTTCTAGAGGCGTCTCCTTTCCCGTTTCGAGCCCTCCAAAGGTTGGTGGTTTAAGAATCCAATGTGCTCGTGTTGGAGGTGTAGAGATTCCTAACAACAAGCGAATTGAGTTTTCACTTCAGTATATTCATGGGATTGGCCGGACCAGAGCTCGCAAAATCCTCTGTGATATCTCCATGGACAACAAATTGACAAAGGACTTGTCTGAGGAGGACCTCATTACTCTTAGAGATGAAGTCTCCAAATACGTGATTGAAGGCGACTTGAGGCGGTTTAATGCACTTAATATAAGGAGACTGAAGGAGATCCAATGCTATAGAGGGGTAAGACATATTCAGGGTCTTCCTTGCAGAGGACAGCGCACCAAGAACAATTGCAGGACCTTGAAGGGCAAGAAGGTTGCCATTGCTGGAAAGAAAAAAGCTAGGTAA 642 0.4502 MLGRNLVKKKKKLGTRKDKPIPTVSFWVTSPSVLLHFRSLLQSRSKMAQTLAMPVAPSLSVICNGHISNSLSRGVSFPVSSPPKVGGLRIQCARVGGVEIPNNKRIEFSLQYIHGIGRTRARKILCDISMDNKLTKDLSEEDLITLRDEVSKYVIEGDLRRFNALNIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAR 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1133 213 Pfam Ribosomal protein S13/S18 94 198 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi10g1133 213 Hamap 30S ribosomal protein S13 [rpsM]. 92 208 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi10g1133 213 NCBIfam 30S ribosomal protein S13 94 203 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi10g1133 213 SUPERFAMILY S13-like H2TH domain 93 204 IPR010979 GO:0003676
Glsi10g1133 213 ProSitePatterns Ribosomal protein S13 signature. 177 190 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi10g1133 213 ProSiteProfiles Ribosomal protein S13 family profile. 95 201 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi10g1133 213 FunFam 30S ribosomal protein S13 162 211 - -
Glsi10g1133 213 Gene3D 30s ribosomal protein s13, domain 2 162 213 IPR027437 -
Glsi10g1133 213 FunFam 30S ribosomal protein S13 90 161 - -
Glsi10g1133 213 Gene3D - 93 161 - -
Glsi10g1133 213 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 88 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1133 Glsi-ChrGlsi10 7606240 7607527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1133 94 210 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 32.168 5.19e-07 46.2