Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1122 ATGGCCTTACAGAATATTGGTGCATCAAACCGTGATGATGCCTTCTATAGGTATAAGATGCCTAAAATGATAACCAAGATTGAAGGTAGAGGAAATGGTATCAGGACTAATGTGGTTAACATGGTTGACATTGCAAAAGCCCTGGCTAGACCTGCATCTTACATTACAAAGTATTTTGGTTGTGAGCTTGGAGCCCAATCAAAATTTGATGAGAAAACTGGAACTTCCCTTGTGAATGGGGCCCATGAAACCACAAAGCTTGCAGGACTCCTTGAGAATTTCATAAAGAAATTTGTTCAATGCTATGGTTGTGGGAACCCTGAGACTGAGATAGTTATCACAAAGACACAGATGATCACCCTAAAATGTGCTGCCTGTGGCTTTGTCTCGGATGTTGATATGAGGGATAAGCTTACAACATTTATACTTAAGAATCCACCTGAGCAGAAGAAGGGATCAAAGGACAAGAAGGCCATGAGGAGGGCTGAAAAGGAGCGCCTTAAAGAGGGTGAGGCTGCTGATGAGGAATTAAGGAAGCTTAAAAAGGAAGGAAAAAAAAAAGGAATTGCTGCTAATGTGAAGGATGCTACTAAAGCTTCATCAAAGAAGAAAAACACTGGTTCTGATGAGGACCACTCCCCTGCCCGTAGTCGTGCTGATGAAAATGATCAATCTGATGGTGATGATGATGGTGTCCGATGGCAGACAGACACTTCGGTGGAGGCAGCTCAGCAACGCATCCAGGAGCAGTTAAATGCTGTTACTGCTGACATGGTCATGCTTTCTACCGGCATTGAAGAGAAAAAGAAGTCTCCAAAGGATTCTCCAATGCAGGAAGTGAATTCTGAGTTTAAAAAGCATGGAAATGGTGCTGTTGTTAGTACACATGATCGGCTTGTTGAGGAGTTAACAGAGTATTTGAAGAAAGGATCTTCTGCTAGTCAGCTCAAATCTTTTCTTGGTTCTCTCTCTGGCAATTCCCAAGAGGTTGTTAATGCTTTATTTGAAGCCCTTTTTGGTGATGTTCGCAAAGGATTTGCCAAAGTAGCATCTAAGAAGAAGAATTACCTTGCTGTAGCCGCTCAATTTGGGGGATCTCAAATGGTTTTGTTGCATGCTATGGAGTCTTTTTGTGGGAAAGCAAGCATGGAGGCAGTGAAAGAGGTTGCATTGGTCTTAAAGGATCTCTATGATTGTGATGTGTTGGAGGAAGAGTCTATACTTGACTGGTACCGGCAGGGTTTGACTGGGAGCAATAAGAGTGCGCAAATTTGGAAAAGCATCAAGCCCTTCATCGAGTGGCTCCAGAATGCCGAGTCTGAATCAGGTGAAGATTGA 1338 0.4297 MALQNIGASNRDDAFYRYKMPKMITKIEGRGNGIRTNVVNMVDIAKALARPASYITKYFGCELGAQSKFDEKTGTSLVNGAHETTKLAGLLENFIKKFVQCYGCGNPETEIVITKTQMITLKCAACGFVSDVDMRDKLTTFILKNPPEQKKGSKDKKAMRRAEKERLKEGEAADEELRKLKKEGKKKGIAANVKDATKASSKKKNTGSDEDHSPARSRADENDQSDGDDDGVRWQTDTSVEAAQQRIQEQLNAVTADMVMLSTGIEEKKKSPKDSPMQEVNSEFKKHGNGAVVSTHDRLVEELTEYLKKGSSASQLKSFLGSLSGNSQEVVNALFEALFGDVRKGFAKVASKKKNYLAVAAQFGGSQMVLLHAMESFCGKASMEAVKEVALVLKDLYDCDVLEEESILDWYRQGLTGSNKSAQIWKSIKPFIEWLQNAESESGED 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1122 445 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Glsi10g1122 445 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Glsi10g1122 445 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Glsi10g1122 445 Gene3D - 290 436 - -
Glsi10g1122 445 SUPERFAMILY ARM repeat 297 439 IPR016024 -
Glsi10g1122 445 CDD W2_eIF5 294 442 - -
Glsi10g1122 445 Gene3D - 105 145 - -
Glsi10g1122 445 SMART 542_3 354 441 IPR003307 GO:0005515
Glsi10g1122 445 ProSiteProfiles W2 domain profile. 270 445 IPR003307 GO:0005515
Glsi10g1122 445 MobiDBLite consensus disorder prediction 148 233 - -
Glsi10g1122 445 Pfam eIF4-gamma/eIF5/eIF2-epsilon 367 445 IPR003307 GO:0005515
Glsi10g1122 445 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Glsi10g1122 445 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 444 IPR045196 GO:0003743|GO:0006413
Glsi10g1122 445 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Glsi10g1122 445 FunFam Eukaryotic translation initiation factor 5 100 145 - -
Glsi10g1122 445 MobiDBLite consensus disorder prediction 143 233 - -
Glsi10g1122 445 Gene3D - 2 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1122 Glsi-ChrGlsi10 7528649 7529986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1122 1 438 Eukaryotic Initiation Factors Gene Family AT1G77840 66.075 0.0 550