Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1121 ATGCCTCCGCCACCCCCGCCCCAGCTCTCGCCGCAGACTCGCCGTCTCCACCCTAAAATCTGGCGAGCATGCGCCGGCTCATCTGTTCAAATCCCTACTCTGCATTCTAGGGTTTATTACTTCCCTCAAGGCCATTTGGAGCATGCCTCCTCGTCTCCTCCATACCTCTCCCCTCTTCTCCTCTCTCGTCCTTTCATTCCCTGTCGCATCTCCTCCGTTCACTTCCTTGCTGATCCTCTCACCGACGAGGTCTTTGCTAAGCTTCTCCTCCATCCGCTCAATGATTTCACCCCCACTCGTTATCACCATCCCGTCGTCGAGTCCGCTGAGCCACCTGACCATGATAAGGTCGTGTCGTTTGCCAAGATTCTGACGCCTTCTGATGCCAACAATGGCGGTGGATTCTCTGTTCCGAGGTTCTGTGCTGACTCCATCTTCCCGCCGCTGAACTTACAGTCCGACCGGCCGAACCAGACATTGTCCGTCACTGACGTGCACGGTGTAATCTGGGAATTTTGCCACATTTATCGAGGCACGCCTAGGCGGCACTTGCTCACTACTGGATGGAGCAAGTTTGTCAACCATAAGAAGTTGATTGCCGGTGATTCCGTGGTTTTCATGAAGAACTCCAGGGGGGAGATATTCGTTGGGATTCGCAGAGCTGTGCGATTCCCTGCAGGAAATGGTGGCGATTATGCCAGAAGGTGCTCCCAGATCGGTGTCGTGAGAACTAAGGTTGAGGAGGAGCAGCAGGAAGATTGCTATACTGGTTTCAGAGGGAGAAATGGATTTTCGAGGAACGGGAGGGGGAAGTTGTCTTCTAAGGCAGTTGTAGACGCAGCAGAATCGGCAGCAAAAAATATGCCGTTTGAAGTTGTCTATTATCCAAGGGCAGGTTGGTCGGACTTTGTGTTGAAAGCAGAGGTTGTGGAGGAAGCACTGAATGTCATATGGACTCCCGGAATGAGAGTCAAAATGTCTATGGAGACAGAGGATTCGTCCAGGATGACCTGGTTTCAGGGGACAGTCTCTTCGGCATCTGCTTCTGACAATGGGCCTTGGCGGGGTTCTCCTTGGCGTATGCTTCAGATTACATGGGATGAACCTGAAGTTTTGCATAATGCAATGCGAGTCAGCCCTTGGCAGGTTGAACATATTTCCCCCACACCTCTGCTTCATACAGCATACCCCCCTGCAAAAAAGTTTAGAGCTGCTCATTATTCTGGGGTGCCACCTGATAGAGAGGAAGACCCCTTCTTTACTATGACAAGATTCACTAATTCAACAATGGGACACTTGAACCAGTCATTGTTGACTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATTTATTTTCTGTGTCAAGCTTTTCCAATTTTCAAAGTGATAATACTCATGTGTGTACTGCTAATTCCTTTGGGAATGACACAGTGCCAAAGTTGAATACTGTGTCAACAGATCTAAACATAGGCAGTTCTCAATCTGACAACTTGTCACATGATAGCCAGAGTAGTTTTCATTCTTTTGGCAAAGAATTTGTTGGGAACCATAGCTGCAACTCAACAAAACTTGGTGCTGGTTCATTTCAGCTATTTGGTAAGACCATTCAAATGAAACAGCCTGTTGTAAGTGGTTTGCATGGTGCGGGTTGCACAGGAGATGATGGGAGTAAGGGTTGCAGTGAAACTGAAGGCATTGATAAGCCACTTGATCATTCGACTTGCTCAAAATTGCTCAACAGGCTTGATGTCCAATGCCAAAAAGCATCTACAGATTTAGATTGCCTTTCGTGCAGTATCTCTTCCAAACTACCATTAATCGAAGAACAAGAAGAGAAGGTTCGGATAAAAAATGGAGAAGAAAAATATGATGATGAAACGATTAACTTATGGGACGACATTTGTCTCTGA 1920 0.4776 MPPPPPPQLSPQTRRLHPKIWRACAGSSVQIPTLHSRVYYFPQGHLEHASSSPPYLSPLLLSRPFIPCRISSVHFLADPLTDEVFAKLLLHPLNDFTPTRYHHPVVESAEPPDHDKVVSFAKILTPSDANNGGGFSVPRFCADSIFPPLNLQSDRPNQTLSVTDVHGVIWEFCHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFMKNSRGEIFVGIRRAVRFPAGNGGDYARRCSQIGVVRTKVEEEQQEDCYTGFRGRNGFSRNGRGKLSSKAVVDAAESAAKNMPFEVVYYPRAGWSDFVLKAEVVEEALNVIWTPGMRVKMSMETEDSSRMTWFQGTVSSASASDNGPWRGSPWRMLQITWDEPEVLHNAMRVSPWQVEHISPTPLLHTAYPPAKKFRAAHYSGVPPDREEDPFFTMTRFTNSTMGHLNQSLLTYDTFPAGMQGARHDLFSVSSFSNFQSDNTHVCTANSFGNDTVPKLNTVSTDLNIGSSQSDNLSHDSQSSFHSFGKEFVGNHSCNSTKLGAGSFQLFGKTIQMKQPVVSGLHGAGCTGDDGSKGCSETEGIDKPLDHSTCSKLLNRLDVQCQKASTDLDCLSCSISSKLPLIEEQEEKVRIKNGEEKYDDETINLWDDICL 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1121 639 CDD B3_DNA 119 220 IPR003340 GO:0003677
Glsi10g1121 639 SMART B3_2 120 222 IPR003340 GO:0003677
Glsi10g1121 639 SUPERFAMILY DNA-binding pseudobarrel domain 112 233 IPR015300 -
Glsi10g1121 639 Gene3D - 318 389 - -
Glsi10g1121 639 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 561 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi10g1121 639 FunFam Auxin response factor 118 222 - -
Glsi10g1121 639 Gene3D - 117 222 IPR015300 -
Glsi10g1121 639 Pfam Auxin response factor 280 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi10g1121 639 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Glsi10g1121 639 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1121 Glsi-ChrGlsi10 7518215 7525365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1121 14 567 B3 DNA Binding Superfamily AT1G77850 50.805 1.95e-178 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi10g1121 B3 2.6e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1121 10 7518215 7525365 Glsi08g1204 08 8755888 8759138 CCT
Glsi10g1121 10 7518215 7525365 Glsi10g1121 10 7518215 7525365 ECH