LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g1121	ATGCCTCCGCCACCCCCGCCCCAGCTCTCGCCGCAGACTCGCCGTCTCCACCCTAAAATCTGGCGAGCATGCGCCGGCTCATCTGTTCAAATCCCTACTCTGCATTCTAGGGTTTATTACTTCCCTCAAGGCCATTTGGAGCATGCCTCCTCGTCTCCTCCATACCTCTCCCCTCTTCTCCTCTCTCGTCCTTTCATTCCCTGTCGCATCTCCTCCGTTCACTTCCTTGCTGATCCTCTCACCGACGAGGTCTTTGCTAAGCTTCTCCTCCATCCGCTCAATGATTTCACCCCCACTCGTTATCACCATCCCGTCGTCGAGTCCGCTGAGCCACCTGACCATGATAAGGTCGTGTCGTTTGCCAAGATTCTGACGCCTTCTGATGCCAACAATGGCGGTGGATTCTCTGTTCCGAGGTTCTGTGCTGACTCCATCTTCCCGCCGCTGAACTTACAGTCCGACCGGCCGAACCAGACATTGTCCGTCACTGACGTGCACGGTGTAATCTGGGAATTTTGCCACATTTATCGAGGCACGCCTAGGCGGCACTTGCTCACTACTGGATGGAGCAAGTTTGTCAACCATAAGAAGTTGATTGCCGGTGATTCCGTGGTTTTCATGAAGAACTCCAGGGGGGAGATATTCGTTGGGATTCGCAGAGCTGTGCGATTCCCTGCAGGAAATGGTGGCGATTATGCCAGAAGGTGCTCCCAGATCGGTGTCGTGAGAACTAAGGTTGAGGAGGAGCAGCAGGAAGATTGCTATACTGGTTTCAGAGGGAGAAATGGATTTTCGAGGAACGGGAGGGGGAAGTTGTCTTCTAAGGCAGTTGTAGACGCAGCAGAATCGGCAGCAAAAAATATGCCGTTTGAAGTTGTCTATTATCCAAGGGCAGGTTGGTCGGACTTTGTGTTGAAAGCAGAGGTTGTGGAGGAAGCACTGAATGTCATATGGACTCCCGGAATGAGAGTCAAAATGTCTATGGAGACAGAGGATTCGTCCAGGATGACCTGGTTTCAGGGGACAGTCTCTTCGGCATCTGCTTCTGACAATGGGCCTTGGCGGGGTTCTCCTTGGCGTATGCTTCAGATTACATGGGATGAACCTGAAGTTTTGCATAATGCAATGCGAGTCAGCCCTTGGCAGGTTGAACATATTTCCCCCACACCTCTGCTTCATACAGCATACCCCCCTGCAAAAAAGTTTAGAGCTGCTCATTATTCTGGGGTGCCACCTGATAGAGAGGAAGACCCCTTCTTTACTATGACAAGATTCACTAATTCAACAATGGGACACTTGAACCAGTCATTGTTGACTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATTTATTTTCTGTGTCAAGCTTTTCCAATTTTCAAAGTGATAATACTCATGTGTGTACTGCTAATTCCTTTGGGAATGACACAGTGCCAAAGTTGAATACTGTGTCAACAGATCTAAACATAGGCAGTTCTCAATCTGACAACTTGTCACATGATAGCCAGAGTAGTTTTCATTCTTTTGGCAAAGAATTTGTTGGGAACCATAGCTGCAACTCAACAAAACTTGGTGCTGGTTCATTTCAGCTATTTGGTAAGACCATTCAAATGAAACAGCCTGTTGTAAGTGGTTTGCATGGTGCGGGTTGCACAGGAGATGATGGGAGTAAGGGTTGCAGTGAAACTGAAGGCATTGATAAGCCACTTGATCATTCGACTTGCTCAAAATTGCTCAACAGGCTTGATGTCCAATGCCAAAAAGCATCTACAGATTTAGATTGCCTTTCGTGCAGTATCTCTTCCAAACTACCATTAATCGAAGAACAAGAAGAGAAGGTTCGGATAAAAAATGGAGAAGAAAAATATGATGATGAAACGATTAACTTATGGGACGACATTTGTCTCTGA	1920	0.4776	MPPPPPPQLSPQTRRLHPKIWRACAGSSVQIPTLHSRVYYFPQGHLEHASSSPPYLSPLLLSRPFIPCRISSVHFLADPLTDEVFAKLLLHPLNDFTPTRYHHPVVESAEPPDHDKVVSFAKILTPSDANNGGGFSVPRFCADSIFPPLNLQSDRPNQTLSVTDVHGVIWEFCHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFMKNSRGEIFVGIRRAVRFPAGNGGDYARRCSQIGVVRTKVEEEQQEDCYTGFRGRNGFSRNGRGKLSSKAVVDAAESAAKNMPFEVVYYPRAGWSDFVLKAEVVEEALNVIWTPGMRVKMSMETEDSSRMTWFQGTVSSASASDNGPWRGSPWRMLQITWDEPEVLHNAMRVSPWQVEHISPTPLLHTAYPPAKKFRAAHYSGVPPDREEDPFFTMTRFTNSTMGHLNQSLLTYDTFPAGMQGARHDLFSVSSFSNFQSDNTHVCTANSFGNDTVPKLNTVSTDLNIGSSQSDNLSHDSQSSFHSFGKEFVGNHSCNSTKLGAGSFQLFGKTIQMKQPVVSGLHGAGCTGDDGSKGCSETEGIDKPLDHSTCSKLLNRLDVQCQKASTDLDCLSCSISSKLPLIEEQEEKVRIKNGEEKYDDETINLWDDICL	639

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Glsi10g1121	639	CDD	B3_DNA	119	220	IPR003340	GO:0003677
Glsi10g1121	639	SMART	B3_2	120	222	IPR003340	GO:0003677
Glsi10g1121	639	SUPERFAMILY	DNA-binding pseudobarrel domain	112	233	IPR015300	-
Glsi10g1121	639	Gene3D	-	318	389	-	-
Glsi10g1121	639	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	14	561	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
Glsi10g1121	639	FunFam	Auxin response factor	118	222	-	-
Glsi10g1121	639	Gene3D	-	117	222	IPR015300	-
Glsi10g1121	639	Pfam	Auxin response factor	280	363	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
Glsi10g1121	639	ProSiteProfiles	B3 DNA-binding domain profile.	120	222	IPR003340	GO:0003677
Glsi10g1121	639	Pfam	B3 DNA binding domain	120	221	IPR003340	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g1121	Glsi-ChrGlsi10	7518215	7525365	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g1121	14	567	B3 DNA Binding Superfamily	AT1G77850	50.805	1.95e-178	518

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Glsi10g1121		B3	2.6e-21	CL0405

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi10g1121	10	7518215	7525365	Glsi08g1204	08	8755888	8759138	CCT
	Glsi10g1121	10	7518215	7525365	Glsi10g1121	10	7518215	7525365	ECH

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