Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1088 ATGGCAGCTACAATGGATTTCTACAGTAGCAGACCACTTCAGGCAGATCCCTTCCGAGGTGAGCTAATGGAAGTTCTAGAACCTTTTATGAAAAGTCCTTCCACAACTCCCTCTCCCTCAGCAGCCTCATCTCCTTCAAATTCTTCTCTCCCTTCTACTTCGTACTCTTCTTCTTCCACTTACTTCCAATTGTCTCCATCAGTCCCATCCCAGCCCAGTTTTTATGCAGATGGTTGCTCCGCGTCGATGACCCCTGTATTTGCCGATGGGTTATCGAACAGCCAAAACTTTATCGGTTTCGAGCAACCAAGCTCTGTTATTGGGCTCAACCACCTAACCCCATCTCAGATTAACCAGATCCAAGCTCAGATCCAGATCCAGACCCAGCAGAACCCGTCTTGGCAGCAAAATACTCATGGCTTCTTGAGTCCCAAACCTATTCCGATGAAGCTAATGGGTACACCTCCTAAACCCACCAAGCTCTACAGAGGGGTCAGGCAACGGCATTGGGGAAAATGGGTGGCCGAGATCAGACTCCCAAAGAACCGCACGCGGCTCTGGCTCGGCACCTTCGACACAGCTGAAGAAGCTGCCCTGGCCTACGACAAGGCCGCTTACAAGCTCAGAGGTGACTTTGCTAGGCTCAACTTCCCGAACCTCCGACACCACGGATCCTGTGTTGGGGGCGAATTCGGGGAGTACAAGCCTCTTCATTCCTCGGTGGATGCAAAGCTTCAAGCTATTTGCGAAAGCATGGCTGAGGTGCAGAAACAGGGGAAGTCAGGGAAGCCGACGAGCTCATCTAAGAGGTCAACAGGGCGGTCGAAACAGGGTTCGAAGGCTGCTCCACCACAGAAGGTGGCCGACGAAGTTGATTTGAAGGTGGAAAGTTCGTCGTCGGCGGCGATGACGGAGAGCGAGGGATCCGCAGGTTCTTCACCTTTGTCAGATTTGACTTTCGCGGATCCGAGTGAACCGCAGTGGGATGGTGGTTCGGATGATTTTAATCTGCTCAAGTACCCGTCTTATGAGATTGATTGGGCTTCTCTGTGA 1053 0.5195 MAATMDFYSSRPLQADPFRGELMEVLEPFMKSPSTTPSPSAASSPSNSSLPSTSYSSSSTYFQLSPSVPSQPSFYADGCSASMTPVFADGLSNSQNFIGFEQPSSVIGLNHLTPSQINQIQAQIQIQTQQNPSWQQNTHGFLSPKPIPMKLMGTPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHHGSCVGGEFGEYKPLHSSVDAKLQAICESMAEVQKQGKSGKPTSSSKRSTGRSKQGSKAAPPQKVADEVDLKVESSSSAAMTESEGSAGSSPLSDLTFADPSEPQWDGGSDDFNLLKYPSYEIDWASL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1088 350 MobiDBLite consensus disorder prediction 258 279 - -
Glsi10g1088 350 PRINTS Ethylene responsive element binding protein signature 184 200 IPR001471 GO:0003700|GO:0006355
Glsi10g1088 350 PRINTS Ethylene responsive element binding protein signature 162 173 IPR001471 GO:0003700|GO:0006355
Glsi10g1088 350 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 350 - -
Glsi10g1088 350 SUPERFAMILY DNA-binding domain 161 219 IPR016177 GO:0003677
Glsi10g1088 350 Gene3D AP2/ERF domain 161 219 IPR036955 GO:0003700|GO:0006355
Glsi10g1088 350 MobiDBLite consensus disorder prediction 254 335 - -
Glsi10g1088 350 CDD AP2 160 220 IPR001471 GO:0003700|GO:0006355
Glsi10g1088 350 Pfam AP2 domain 162 210 IPR001471 GO:0003700|GO:0006355
Glsi10g1088 350 SMART rav1_2 161 224 IPR001471 GO:0003700|GO:0006355
Glsi10g1088 350 ProSiteProfiles AP2/ERF domain profile. 161 218 IPR001471 GO:0003700|GO:0006355
Glsi10g1088 350 MobiDBLite consensus disorder prediction 31 50 - -
Glsi10g1088 350 MobiDBLite consensus disorder prediction 297 320 - -
Glsi10g1088 350 FunFam Ethylene-responsive transcription factor 2 160 219 - -
Glsi10g1088 350 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1088 Glsi-ChrGlsi10 7291024 7292076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1088 1 350 AP2-EREBP Transcription Factor Family AT1G78080 54.795 1.71e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi10g1088 AP2 7.9e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1088 10 7291024 7292076 Glsi08g1238 08 8987086 8988156 CCT