Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1073 ATGGTTCTTCTCATCAATCGTTGTCTCTGCTTAATTGTGGTCGTTGATATTGACGACCAAGATTGCTGCCCCTCTTTCGCTCTCACCGAACTAACGACGAGCATGTCTCACTTTGGGAGATCTGGTCCTCCGGACATCAGAGATACCTATTCCCTACTCGTCCTCAATATCACTTTCCGTACAACTGCTGACGATCTCTACCCTCTTTTTGACAAGTACGGCAAGGTCGTCGATGTTTTCATTCCCAGAGACCGAAGGACTGGCGAATCACGAGGTTTCGCGTTTGTTCGTTATAAGTATGCAGACGAGGCACAGAAGGCAGTGGATAAGCTTGATGGAAGAGTCGTCGATGGAAGAGAAATTATGGTTCAATTCGCAAAATACGGACCTAATGCTGAGAAAATTCACAAGGGCAGGGTAGCGGAAACATCCTCAAAGCCTAGAGGGAGGTCAAGGAGCCGCAGCCCTCGTCCAAGGCACAGGGATGAATATAGAGACAGGGACCACAGGAGGAGAAGTCGCAGCAGAAGTAAGGAAAGATATGATCGTGAAAAGTACCGTGAAAGGGAGAGGGATTATCATCACCGAAGCAGGAGCCACAGTACAAGTCCTGATCGGCGTAAAGACCGTAGGAGAGGAAGAGATGATGAGGAGCGACGAACAAAAAGCAGATCATTTGATAGTGCATCGCCAACTCGGCATCGCCCCAGTCCTCATAGAAGCCCATCTCCACACAGGAGGTCTTCTCAAGATGGACAGCATGATGAACAGAATAGTCATGAGCAATCACCTGCTCATAAGGATGTTTCACCACGTGATCTTCGTGCCGATTCCCGAAGTCCATCTCGCCGATCTGATGCTGATGAGTGA 870 0.4885 MVLLINRCLCLIVVVDIDDQDCCPSFALTELTTSMSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGESRGFAFVRYKYADEAQKAVDKLDGRVVDGREIMVQFAKYGPNAEKIHKGRVAETSSKPRGRSRSRSPRPRHRDEYRDRDHRRRSRSRSKERYDREKYRERERDYHHRSRSHSTSPDRRKDRRRGRDDEERRTKSRSFDSASPTRHRPSPHRSPSPHRRSSQDGQHDEQNSHEQSPAHKDVSPRDLRADSRSPSRRSDADE 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1073 289 MobiDBLite consensus disorder prediction 156 229 - -
Glsi10g1073 289 CDD RRM_SRSF2_SRSF8 52 124 - -
Glsi10g1073 289 Gene3D - 32 137 IPR012677 -
Glsi10g1073 289 SMART rrm1_1 51 124 IPR000504 GO:0003723
Glsi10g1073 289 MobiDBLite consensus disorder prediction 134 149 - -
Glsi10g1073 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Glsi10g1073 289 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 48 274 - -
Glsi10g1073 289 MobiDBLite consensus disorder prediction 134 289 - -
Glsi10g1073 289 FunFam Serine/arginine-rich splicing factor SC35 38 137 - -
Glsi10g1073 289 MobiDBLite consensus disorder prediction 244 289 - -
Glsi10g1073 289 SUPERFAMILY RNA-binding domain, RBD 41 135 IPR035979 GO:0003676
Glsi10g1073 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1073 Glsi-ChrGlsi10 7184356 7191458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1073 48 126 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 2.48e-10 58.5