Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1065 ATGGGAAGATCCCCCTGTTGCGATGAGAGTGGCCTGAAGAAAGGACCCTGGACTACTGAGGAGGATCAGAAGCTAGTCCAGTACATCCAGAAACACGGTCATGGAAGTTGGAGAGCTCTTCCCAAGCTAGCTGGTCTCAACAGATGTGGAAAAAGCTGCAGGCTAAGGTGGACCAACTATTTAAGGCCTGACATCAAGAGAGGGAAATTTTCTCAAGAAGAAGAGCAAACAATATTGCATCTCCATTCCGTCCTTGGAAACAAATGGTCAGCAATTGCATCCCATCTTCCCGGCAGGACTGACAACGAGATAAAGAATTTCTGGAATACTCATCTGAAGAAGAAGTTAATTCAGATGGGTTTTGATCCAATGACCCACCAGCCAAGAACTGACCTTTTTTCCAGCTTGCCATATCTGCTAGCTTTGGCCAACATGACAGACCTTGTGGATCATCAATCGTTGGACCACCAGGCTGTGAGGTTACAAGCAGAAGCAGTTCAGCTGGCAAAGCTTCAATATCTTCATTATTTACTCCAGTCCACAACTTCCTTGAGTGAAGAAAATGCCATCCCAAATATGGATGCTTTGAATTTGTTAAATGTGAAAGAGAACCCAGTTATAAACTGCCCACAACTGGATAGTCCAGCTGCCCCATTTTCTCATGGGATTGCTAGCTCCCAACCACTCCACTTTCCAGACCCACAAATCCCTTTCAGTTCTCAATCATGTTTGAATAGTGAGCAGGGCCAAGGCACAAACTTTACGATGATAAGTCAAGGGGATCACACAGCTGATGACTCTAATTCCTGGAGAATCCCATCCCCTGCTCCATTAACTCAGACGGGAGATGCCAGTAGCAGCACTTCTAGCTATGCAGGAAGAACCTCATCTTATTGGCCTGAACTATTTTTCGAGGACCCCATAATGCATGAGCTATCCTAGAAAGAGCGTGTATATATTGCCATTCGCCTTATCTTTCCTCTATGTTGTCTGACAGAAAATGCCTCTTCTGCTTTAATCCAGGCTCGTGAATCAGTGAACATGCCATCAATCTGTGGAAGTTTCTGCGACACATGGGTGGAATCTCAGACTCGTGGAGAGCTAGAAAAAGGTGAAAAGGCCCACTTGAGGGGAAAAAGGCCGAAACCAGAGTTAACCAATCCTCTTCCCTTACTCTCGCTGCCTCGCAGTCCATCTCTCTGTCCCTGCCCCCCGTCTCTCTTCACTCAGTGGCTTTTGGTTGCAACTAGGGTGAAGGGACCAAAATACGAATTCTTTGGCAAAGAATTGAATGGGAGGAAGAGAACTAAAGACAAGTGCCAAAAATTGTCGAGCCCAATATCAAATGTGCTTTTTTCTCTTTATGGCTTAAAATCTCCCTGGTCAAGAAGAGAAGAAAAAGATAAAGAGTAA 1413 0.4522 MGRSPCCDESGLKKGPWTTEEDQKLVQYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSVLGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLFSSLPYLLALANMTDLVDHQSLDHQAVRLQAEAVQLAKLQYLHYLLQSTTSLSEENAIPNMDALNLLNVKENPVINCPQLDSPAAPFSHGIASSQPLHFPDPQIPFSSQSCLNSEQGQGTNFTMISQGDHTADDSNSWRIPSPAPLTQTGDASSSTSSYAGRTSSYWPELFFEDPIMHELSXKERVYIAIRLIFPLCCLTENASSALIQARESVNMPSICGSFCDTWVESQTRGELEKGEKAHLRGKRPKPELTNPLPLLSLPRSPSLCPCPPSLFTQWLLVATRVKGPKYEFFGKELNGRKRTKDKCQKLSSPISNVLFSLYGLKSPWSRREEKDKE 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1065 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi10g1065 470 CDD SANT 69 112 IPR001005 -
Glsi10g1065 470 FunFam MYB-related transcription factor 13 66 - -
Glsi10g1065 470 CDD SANT 16 61 IPR001005 -
Glsi10g1065 470 FunFam Transcription factor MYB39 69 130 - -
Glsi10g1065 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi10g1065 470 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi10g1065 470 Gene3D - 69 116 - -
Glsi10g1065 470 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi10g1065 470 MobiDBLite consensus disorder prediction 232 290 - -
Glsi10g1065 470 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi10g1065 470 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 242 - -
Glsi10g1065 470 Gene3D - 13 66 - -
Glsi10g1065 470 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi10g1065 470 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi10g1065 470 SMART sant 13 63 IPR001005 -
Glsi10g1065 470 SMART sant 66 114 IPR001005 -
Glsi10g1065 470 MobiDBLite consensus disorder prediction 230 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1065 Glsi-ChrGlsi10 7094248 7102179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1065 1 313 MYB Transcription Factor Family AT1G34670 53.659 5.22e-113 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi10g1065 Myb_DNA-binding 8e-17 CL0123