Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1062 ATGGCTGATTCACTCTCAGTTATAGTTGATTCTCCACGACCTAATCTTGAAATGTCTGTTCAACAAGCTAGTAGAGAAGCAGAGTTCTCTGGTCTGGTCCAAAGAAATAGCCATGAGACTGAACCCTCACCAAATGGCTTCCAAAAGGGTGTTGCAGAATTCGTGGGTACATATATTCTTATATTTGCGGCATGTGGGGCTGGTCTTGTGAATAAGGTGCAGCCGCTTACCACAGTAGGCGTAGCAGTTGTTGCGGGTCTATCTTTGACGGTAGTTATATATTCAGTTGGTCATATCTCTGGTGGTCATTTCAATCCAGCAGTAACAGTTGCTTTGGCTGCTGCTCGCAAATTTCCATTCAAACTTGTGCCCACTTATGTGTTGTGCCAGTTGCTGGGTGCTACGCTGGCGAGCCTTACCCTCGACGTGTTGTATAATGGGCAGGCAAATATTCGGGTAACAGTGACTCAGTACTCAAGCTCAACTACTGATCTTGAAGCTATCATATGGGAGTTCATAATCACTTTTATACTAATGTTCACCATTTGTGGTGTTGCCACTGATGACAGAGGGAGCAAAGACCTCGCCGGAGTTGCAATAGGCATTGCAGTTCTATTTAACGTCATCGTTGCTGGGCCTACTACTGGAGCTTCCATGAATCCGGCAAGGAGTTTGGGCCCTGCCATTGTCTCTGGTGTTTTTAAAAATATTTGGGTTTATATTATCGGCCCTATTCTGGGAGCCATTACTGCAACTATGGTTTACAGCCTCCTAAGAGTTCCAAATAGAAGCTACGAAGTCCAGAAATTGTTATGCTGA 819 0.4481 MADSLSVIVDSPRPNLEMSVQQASREAEFSGLVQRNSHETEPSPNGFQKGVAEFVGTYILIFAACGAGLVNKVQPLTTVGVAVVAGLSLTVVIYSVGHISGGHFNPAVTVALAAARKFPFKLVPTYVLCQLLGATLASLTLDVLYNGQANIRVTVTQYSSSTTDLEAIIWEFIITFILMFTICGVATDDRGSKDLAGVAIGIAVLFNVIVAGPTTGASMNPARSLGPAIVSGVFKNIWVYIIGPILGAITATMVYSLLRVPNRSYEVQKLLC 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1062 272 Pfam Major intrinsic protein 47 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi10g1062 272 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Glsi10g1062 272 PRINTS Major intrinsic protein family signature 48 67 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi10g1062 272 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi10g1062 272 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi10g1062 272 PRINTS Major intrinsic protein family signature 201 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi10g1062 272 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi10g1062 272 PRINTS Major intrinsic protein family signature 238 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi10g1062 272 SUPERFAMILY Aquaporin-like 47 265 IPR023271 -
Glsi10g1062 272 Gene3D Glycerol uptake facilitator protein. 12 268 IPR023271 -
Glsi10g1062 272 PANTHER AQUAPORIN NIP2-1 30 263 IPR034294 -
Glsi10g1062 272 CDD MIP 48 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi10g1062 272 NCBIfam MIP family channel protein 52 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1062 Glsi-ChrGlsi10 7088597 7089892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1062 48 263 Major Intrinsic Protein MIP AT5G37810 49.321 3.08e-68 211