Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1056 ATGGCTTACCCACATTACGGATCCCAGTTCGGCGACACCACATTCACCAAAGTGTTTGTTGGAGGACTAGCTTGGGAGACCCCAACTGAAGAAATGCGTAAATATTTCGAGCAGTTCGGAGACATTCTCGAGGCTGTTATTATCAATGACAAGAACAATGGAAAATCTAAAGGCTATGGATTCGTAACTTTCCGTGATCCAGACTCAGCAAGAAGGGCCTGTGCCGATCCCAAACCAGTAATAGATGGAAGAAGAGCAAACTGCAATATTGCTTCTCTAGGACGGCCTCGACCTTCACCGCCACGAGGAGTGGTTCCGCCTCTGGCAGCGCCACCTCCTCTAATGTACCCACCACATGGCAACAGCTATCCAACCTACACTCCTGATTATGGGTACCACCAAGCCATGTTGTACAACCCACAGATTCAACAGCCACAGTACTATCAACAATTCTATGGACCGTCATCTTCCACCATGCAGGGCTCCCCATATTACTATGGTTATTCTGTGCAAGCACCAAGGCCCACATTTTCTACATCCCAGCCACACCGCTTACCGGCTGCCACGTCCTATCTGTACTACCCTACACCCATGCAACCCTCCTTCTCCGCTTATCCTCCATCTCAACGAAGAGCAATAAGGCATCCCTTTCCCTCCCCTACTGATTCTCAGACTCAGCACCGAACCTCCTCCGAGACAGCAGCTGGAGTAGTTATGACTACAGAAAGTGCAAATAACCAAGGGAAGAACTAA 753 0.4927 MAYPHYGSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIINDKNNGKSKGYGFVTFRDPDSARRACADPKPVIDGRRANCNIASLGRPRPSPPRGVVPPLAAPPPLMYPPHGNSYPTYTPDYGYHQAMLYNPQIQQPQYYQQFYGPSSSTMQGSPYYYGYSVQAPRPTFSTSQPHRLPAATSYLYYPTPMQPSFSAYPPSQRRAIRHPFPSPTDSQTQHRTSSETAAGVVMTTESANNQGKN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1056 250 Gene3D - 4 103 IPR012677 -
Glsi10g1056 250 SMART rrm1_1 17 89 IPR000504 GO:0003723
Glsi10g1056 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Glsi10g1056 250 MobiDBLite consensus disorder prediction 218 250 - -
Glsi10g1056 250 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Glsi10g1056 250 FunFam RNA-binding protein 24-B isoform X1 3 107 - -
Glsi10g1056 250 PANTHER BOULE-RELATED 8 231 - -
Glsi10g1056 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Glsi10g1056 250 CDD RRM_RBM24_RBM38_like 16 91 - -
Glsi10g1056 250 MobiDBLite consensus disorder prediction 203 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1056 Glsi-ChrGlsi10 7022304 7024491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1056 12 173 C2H2 Transcription Factor Family AT2G19380 29.630 6.38e-16 75.1