Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1035 ATGGCCAGGATACACAGAAAGCTATTCCCAGCACTTACCACTATAAACCAAACCCAAGATTGTACTGATTTTTGTGACCCAGCATGCCCCTACAACTGCTACTCTTACCCAGACTACTATTACTTCCCACCACCACCACCTCCTCTACCACCTCTTTCAGCTGCTGAGCACTCAAGCCTAGGTAACCATATCCCCTCCTATTTCATCATCCTTGCTTCTTTGTTCGTAGTCATTTTTGTTGTTCTTGGTTTCTACGTTATCAAAACGAAATGTTACGCCGATTGGTGTGGCTGGAGAGGCAATGGACCCGCTCCCTCCCAATTAGACAGCTCTGAGGAAGAGTTTCTTGATGAGAACCAAGTTGATCACCCCATCTGGTTTATAACTACCAATGGTTTACGACAGTCAATCATAAATTCTATTACAGTTTGTAAGTATAGAAAGGGCGAGGGATTGATTGAAGGAACCGAGTGTTCTGTGTGTTTGAACGAGTTCCAGGAAAATGAAACATTAAGACTTTTGCCAAAGTGTAACCACGCCTTTCACATCCCCTGTATTGACACTTGGTTGAGTTCTCATACCAATTGCCCTCTCTGCCGTGCTGGTATTGTCTCTAACAGTGTCAGACCTGAAGCTGCCATATCAAATATGGGTTCAACGGAGCTAAGCTCTAACAATTTAGGAATAAATCGAGAGACCCAGACGGAGAATTCGCAGAACGAAGGTGAATTAAGCAATAATATGGCAGTAATTGGCACTGGAGTATCCGCAAACAGGGCTGGAACAGGGGAAGCCCAAGATTCTACGGATGAATCGATTACAAAGGAGCACCCGAATGTTGAGAGGAATCAAGTTGTGCAGGTAATCAGTGATTTAGATGAGCATCATCAGTTTCTAACCAATGACATACAAAACGAGATAAGGTCTATGTCAATGGATTCTAGACTGGCTAGTAGTAGTTGCCGTGGTCCAGGTTGTATAACAGAGCCCGAAAGCCATTCCCTTTGTCCTACAGAGGATAACCCAGAGCCCCAGGCAGCAATGTTTGAAGCGAGTCGTCGTTCCTCTATTGCAAAATGTCTACATATAAGTCCTGTTTCTATGAAAAGGTCATTCTCCTGCAATGGAAGGATTCTATCTACGAGAGGTTGTAGGAGTCTAGATACAAGTCTTCCCTACTAA 1182 0.4399 MARIHRKLFPALTTINQTQDCTDFCDPACPYNCYSYPDYYYFPPPPPPLPPLSAAEHSSLGNHIPSYFIILASLFVVIFVVLGFYVIKTKCYADWCGWRGNGPAPSQLDSSEEEFLDENQVDHPIWFITTNGLRQSIINSITVCKYRKGEGLIEGTECSVCLNEFQENETLRLLPKCNHAFHIPCIDTWLSSHTNCPLCRAGIVSNSVRPEAAISNMGSTELSSNNLGINRETQTENSQNEGELSNNMAVIGTGVSANRAGTGEAQDSTDESITKEHPNVERNQVVQVISDLDEHHQFLTNDIQNEIRSMSMDSRLASSSCRGPGCITEPESHSLCPTEDNPEPQAAMFEASRRSSIAKCLHISPVSMKRSFSCNGRILSTRGCRSLDTSLPY 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1035 393 FunFam RING-H2 finger protein ATL54 133 206 - -
Glsi10g1035 393 PANTHER RING-H2 FINGER PROTEIN ATL16 47 318 IPR044600 GO:0016567|GO:0016740
Glsi10g1035 393 Pfam Ring finger domain 157 200 IPR001841 -
Glsi10g1035 393 SMART ring_2 158 199 IPR001841 -
Glsi10g1035 393 CDD RING-H2_EL5-like 157 200 - -
Glsi10g1035 393 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Glsi10g1035 393 SUPERFAMILY RING/U-box 150 205 - -
Glsi10g1035 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 207 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1035 Glsi-ChrGlsi10 6904702 6905883 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1035 1 248 C3H Transcription Factor Family AT1G72220 45.725 2.30e-66 214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1035 10 6904702 6905883 Glsi10g1035 10 6904702 6905883 ECH