Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1034 ATGGCATTAGAGGCTGTAGTTTTCCCACAAGATCCATTCAATTATAGTTGCAAGGACTTGTACTTCTTATTAGGAGGAGGTGCAGGTGGTGGAGCTTGGAGCCACGACTATGGTTTACAAGCACAACAAGAGAAGAAAGCCTTTCTTGGAATTATAAACAATAACATAGAGCTGAGTCTCCATGCAAAGTGGGATTCTTCTTCTTCGTCTCCCTCGGTGTTGCAAAATGTCAAGGACCCATCGGATTCCAACTCTTCTCCCGAGGCCTGCACGGTTGATCAATCTCTCTCGGCAACTATCCCTCCTTCCTCAGTGGAAGCCACCGTGATTGCTCCCACAGGTCGCCGGAAACGACGTCGCACCAAGAACGTCAAGAACAAGGAGGAAATCGAGAACCAGAGGATGACTCACATTGCCGTAGAGCGGAATCGCCGAAAACAGATGAATGAGTACCTGGGTGTGCTCCGATCCTTGATGCCTCCTTCTTATGTTCAAAGGGGTGACCAAGCCTCTATTATTGGAGGCGCCATTAACTTTGTGAAGCAGCTGGAACAGCTTTTACAATCCATGGAGGGTGAAAAGAAAACAAAACAACACTCACAAGACTATGGCCCCAACTCACCCTTTGCTGAGTTCTTCACCTTCCCACAGTACACGATGCGTGCAACTCACAGCAACACAAGCTGCACGGCCACGAATGAGACCAGGATGGCACAGAACCAGAACCAGTCGACCGTAGCCGACATAGAAGTGAGCTTGGTGGACAGCCATGCCAACCTCAAGATACTCTCGAAGAAACGAGCGGGGCTGCTTATGAAGATGGTTGTTGGGCTTCAAAGTCTCAGACTCAGCATTCTCCACCTTAATGTCACCACCGAGGACGATATGGTCCTTTACTCCGTTAGTGTAAAGGTTGAGGAAGGGTGTCAGGTGAACACAGTGGATGAAATCGCAGCTGCTGTGAATCAACTGTTGCGCACAATTCAAGAAGAAGCTGCATTCAGCTGA 1008 0.4881 MALEAVVFPQDPFNYSCKDLYFLLGGGAGGGAWSHDYGLQAQQEKKAFLGIINNNIELSLHAKWDSSSSSPSVLQNVKDPSDSNSSPEACTVDQSLSATIPPSSVEATVIAPTGRRKRRRTKNVKNKEEIENQRMTHIAVERNRRKQMNEYLGVLRSLMPPSYVQRGDQASIIGGAINFVKQLEQLLQSMEGEKKTKQHSQDYGPNSPFAEFFTFPQYTMRATHSNTSCTATNETRMAQNQNQSTVADIEVSLVDSHANLKILSKKRAGLLMKMVVGLQSLRLSILHLNVTTEDDMVLYSVSVKVEEGCQVNTVDEIAAAVNQLLRTIQEEAAFS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1034 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 202 IPR036638 GO:0046983
Glsi10g1034 335 Pfam Helix-loop-helix DNA-binding domain 133 184 IPR011598 GO:0046983
Glsi10g1034 335 CDD bHLH_AtFAMA_like 135 208 - -
Glsi10g1034 335 Coils Coil 180 200 - -
Glsi10g1034 335 PANTHER MAX DIMERIZATION, MAD 86 332 - -
Glsi10g1034 335 SMART finulus 138 189 IPR011598 GO:0046983
Glsi10g1034 335 Gene3D - 122 200 IPR036638 GO:0046983
Glsi10g1034 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 183 IPR011598 GO:0046983
Glsi10g1034 335 MobiDBLite consensus disorder prediction 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1034 Glsi-ChrGlsi10 6898554 6899871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1034 1 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.692 2.09e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi10g1034 HLH 1.3e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1034 10 6898554 6899871 Glsi08g1289 08 9364240 9365372 CCT
Glsi10g1034 10 6898554 6899871 Glsi10g1034 10 6898554 6899871 ECH